Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01338 ATGTCAAGCTCAGGAGGACTAGATCGACCGGCTTTAGTAATGATCATCGTGGGAGGGATTGTGATCTTTATATCACTTTGTTTAGCAATATGTCGTGGAAGGATTAAGATTGTAGGTATACAAGTGATTCGGGATGCACAATTTTTAACTCACACTATGGATAAATTTCTGAATGACATTGAAAAGGACAAGCCATTTAGGTTCACTACTCAACAGTTAAAGATTGTAACTGATAACTTCTCTTATTTATTGGGATCTGGAGGTTTTGGTTCGGTATACAAAGGAGTTTTTAGTGACGATACCATTGTAGCTGTGAAGGTTCTGTTTAGAAGTTCTGACAAAAGAATCCAAGAACAATTTATGGCTGAAATTGGAACTTTAGGTAAAGTTCATCATTTCAACTTAGTTAAACTATTCGGATTTTGTGTTGAAAAGAACTTGATTGCAATAGTTTATGAGTACATGGGAAATGGCTCTCTTGACAAGTATTTATTCAAACAAGTTAAGGCTTTGGAATTTGAAAAGCTTCATGAGATTGCAATTGGAACAGCAAGAGGCATTGCTTATTTGCACGAAGAGTGTCAACAAAGAATAATTCACTACGATATTAAGCCGGCGAATATTCTCTTGGACATGAATTTCAATCCTAAGGTCGCGGATTTTGGATTGGCCAAGCTCTGCAACAGGGATAATACTCATATATCCATGACTGGAGGCAGGGGAACCCCCGGTTATGCTGCGCCGGAGCTTTGGATGCCTTTCCCTGTGACTCACAAATGTGATGTTTATAGCTTTGGGATGTTGTTGTTTGAAATCATTGGTGGGAGAAGAAATGTTGATACTAATGTTCCGGAAAGCCAAGAGTGGTTTCCAATGTGGGTTTGGAAAAAATTTGATGGTGGAGAGTTACAGAATTCAGCATTAGTGTCTGAATTATTGTTGGAGAAACATAAGGAGATGGTAGAAAGAATGGTTAAGGTAGCTTTGTGGTGTGTTCAGTATAGGCCAGAATCAAGGCCTATGATGAGTGCTGTTGTGAAAATGTTGGAAGGTTCAGTAGAGATTTCTCAACCTTTGAATCCATTTCAATACTTGATGGACAATGGTTTTGCTACTCTTCCACAGCAATATTCATCAAGTAATTGCAATGCTACAACTGCAACTACAAGTAGTTATTGTGACTCTTCTGTGATTGCTGTGGACTCCAATATTGTAACTGCTCATTCAATTTAG 1233 0.382 MSSSGGLDRPALVMIIVGGIVIFISLCLAICRGRIKIVGIQVIRDAQFLTHTMDKFLNDIEKDKPFRFTTQQLKIVTDNFSYLLGSGGFGSVYKGVFSDDTIVAVKVLFRSSDKRIQEQFMAEIGTLGKVHHFNLVKLFGFCVEKNLIAIVYEYMGNGSLDKYLFKQVKALEFEKLHEIAIGTARGIAYLHEECQQRIIHYDIKPANILLDMNFNPKVADFGLAKLCNRDNTHISMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGGRRNVDTNVPESQEWFPMWVWKKFDGGELQNSALVSELLLEKHKEMVERMVKVALWCVQYRPESRPMMSAVVKMLEGSVEISQPLNPFQYLMDNGFATLPQQYSSSNCNATTATTSSYCDSSVIAVDSNIVTAHSI 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01338 410 SUPERFAMILY Protein kinase-like (PK-like) 59 350 IPR011009 -
Aip04g01338 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Aip04g01338 410 SMART serkin_6 78 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01338 410 Pfam Protein tyrosine and serine/threonine kinase 83 349 IPR001245 GO:0004672|GO:0006468
Aip04g01338 410 ProSiteProfiles Protein kinase domain profile. 78 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01338 410 Gene3D Phosphorylase Kinase; domain 1 52 154 - -
Aip04g01338 410 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 372 IPR045874 GO:0004672
Aip04g01338 410 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Aip04g01338 410 Gene3D Transferase(Phosphotransferase) domain 1 155 360 - -
Aip04g01338 410 PANTHER PUTATIVE-RELATED 15 372 - -
Aip04g01338 410 CDD STKc_IRAK 84 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01338 Aip-Chr4 23977855 23979211 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01338 67 364 Receptor kinase-like Gene Family AT5G38280 43.137 2.29e-81 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Aip04g01338 PK_Tyr_Ser-Thr 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01338 - - gmx:100816921 528.865