Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01337 ATGAATTTCAATCCTAAAGTTGCGGATTTCGGATTGGCCAAGCTTTGCAACAGGGATAATACTCATATATCCATGACGGGAGGCAGAGAAACCCCTGGTTATGCTGCACCGGAGCTTTGGATGCCTTTCCCTGTGACTCACAAATGTGATGTTTATAGCTTTGGGATGTTGTTGTTTGAAATCATTGGTGGGAGAAGAAATGCTGATACTAATGTTCCTGAAAGCCAAGAGTGGTTTCCAATCTCTTTCCGGTGGACAAAGTTGTGTTCTCCTTGTCACGAGATTATGGGGTTGGGCCTCTTAGTTGGGTTGTATTTAGCATGCCGCGGAAGTTTTAAGGAGGACATACCTAAGTTCCAAAGGCATCACCAGCAGCAACCACAATTTGCTGCGCTCACTATAGTAAAGTTCTTGAATGATATCGAAAATGAGAAGCCAATCAGATTCACTCATCAGCAACTTCGAATTGCAACCGATAACTACACCAATTTGTTAGGCTCGGGAGGTTTTGGAACAGTTTTCAAAGGAATTTTCAGTGGCACCATGGTGGCTGTGAAGGTTCTGCATGGAACTTCTGACAAGATCATTCAAGCACAGTTTATGGCTGAAATGGGAACGCTTGGTAAACTCCACCATTTCAATCTTGTTCGCTTATATGGATTTTGTTTTGGAAAAGACTTGACAGCGTTGGTTTATGAGTGCATGGCAAATGCGGTTGGAACTGCAAGAGGCATTGCTTATTTGCATGAAGACTGCCAACAAAGAATTATTCACTATGACATTAAACCGGCCAATATTTTGTTAGACCGGAATTTCAATCCTAAGGTTTCCGATTTTGGTTTGGCAAAGCTTCATAACAGGGATAACACTCATATATCTATGACCGGTGGAGGAGGAGGCAGGGGAACCCCCGGTTACGCTGCGCCGGAGCTATGGATGCCGTTCCCGGAAGTAGCACCTTTAGGGACACCAGGGGAGTCAGGAAGTCCTAAAGTCGCAACTCCACTACCTGCCTTAACAAGAAAAGGATCTGCGAGGCCATGA 1044 0.4464 MNFNPKVADFGLAKLCNRDNTHISMTGGRETPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGGRRNADTNVPESQEWFPISFRWTKLCSPCHEIMGLGLLVGLYLACRGSFKEDIPKFQRHHQQQPQFAALTIVKFLNDIENEKPIRFTHQQLRIATDNYTNLLGSGGFGTVFKGIFSGTMVAVKVLHGTSDKIIQAQFMAEMGTLGKLHHFNLVRLYGFCFGKDLTALVYECMANAVGTARGIAYLHEDCQQRIIHYDIKPANILLDRNFNPKVSDFGLAKLHNRDNTHISMTGGGGGRGTPGYAAPELWMPFPEVAPLGTPGESGSPKVATPLPALTRKGSARP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01337 347 Gene3D Transferase(Phosphotransferase) domain 1 231 324 - -
Aip04g01337 347 PANTHER PUTATIVE-RELATED 120 237 - -
Aip04g01337 347 PANTHER PUTATIVE-RELATED 238 315 - -
Aip04g01337 347 PANTHER PUTATIVE-RELATED 2 85 - -
Aip04g01337 347 SMART serkin_6 159 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01337 347 Gene3D Transferase(Phosphotransferase) domain 1 1 137 - -
Aip04g01337 347 ProSiteProfiles Protein kinase domain profile. 1 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01337 347 SUPERFAMILY Protein kinase-like (PK-like) 2 87 IPR011009 -
Aip04g01337 347 ProSiteProfiles Protein kinase domain profile. 159 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01337 347 SUPERFAMILY Protein kinase-like (PK-like) 145 315 IPR011009 -
Aip04g01337 347 MobiDBLite consensus disorder prediction 319 347 - -
Aip04g01337 347 ProSitePatterns Protein kinases ATP-binding region signature. 165 186 IPR017441 GO:0005524
Aip04g01337 347 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 85 IPR045874 GO:0004672
Aip04g01337 347 PANTHER RUST RESISTANCE KINASE LR10-RELATED 120 237 IPR045874 GO:0004672
Aip04g01337 347 PANTHER RUST RESISTANCE KINASE LR10-RELATED 238 315 IPR045874 GO:0004672
Aip04g01337 347 Pfam Protein kinase domain 240 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01337 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Aip04g01337 347 Pfam Protein tyrosine and serine/threonine kinase 163 237 IPR001245 GO:0004672|GO:0006468
Aip04g01337 347 Pfam Protein tyrosine and serine/threonine kinase 6 63 IPR001245 GO:0004672|GO:0006468
Aip04g01337 347 Gene3D Phosphorylase Kinase; domain 1 138 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01337 Aip-Chr4 23972200 23976168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01337 3 67 Receptor kinase-like Gene Family AT1G53420 55.385 1.31e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Aip04g01337 Pkinase 8.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01337 - - ecad:122594152 360.147