Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01335 ATGTCAAGCACAGATGGTTCAGGCGCAGGGATTTATGCCAGTATCATCGTTGTTGTGATAATGGTGAAGATAGCTATTGTAGTTTGTGTATGCCGAGAAAGGATGAAGAATAATAATAAAGACGGATCAGTTCGTCCAGCCATACCGTTCTTGACAATCACAATTGATAAGTTCTTGAATGATATTGAAAGGGAGAAGCCAATTAGATTCACCGATCAGCAGCTACGCATTGCGACCGATAACTACTCAAATTTGTTGGGATCAGGAGGTTTCGGCACAGTTTACAAAGGAATCTTCAGCAACGGCACAATTGTGGCTGTGAAGGTGTTGTATGGAAGTTCTGACAAAAGAATTCAAGAACAGTTTATGGCAGAAATGGGAACACTTGGTAGGATCCACCATTTCAATCTTGTTCGGCTGTACGGATTTTGTTTCGAAAGGAACTTGATAGCGTTGGTTTATGAGTACATGGGAAATGGATCTCTTGACAGGTATTTGTTTAGAGAAATCAAGACTTTGGAATTTGAAAAGCTTCATGAGATTGCGGTTGGAACAGCAAGAGGCATCGCTTATTTACATGAAGAGTGCCAACACAGAATAATCCATTATGATATAAAACCAGGGAATATTCTCTTGGACAAGAATTTCAATCCAAAAGTCGCGGATTTCGGTTTGGCCAAGCTTTGTAACAGGGATAATACTCATATATCCATGACTGGAGGCAGGGGAACTCCCGGTTACGCTGCACCAGAACTTTGGATGCCATTTCCTGTCACTCACAAGTGCGATGTTTACAGCTTTGGCATGTTGTTATTCGAAATCATAGGCAGGAGAAGAAACGTAGACACGAATCTTTCAGAAAGTCAAGAATGGTTTCCAATCTGGGTTTGGAAGAAATACGATGGCGGAGAATTAGGAAATTCGAAAATAGTGGCGGAAATGGAGGAGAAACAAAAGGAAATGACAATGAGAATGGTCAGGGTGGCTCTATGGTGTGTCCAATATAGGCCAGAACTAAGGCCTAATATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCAGATGAGATTCCAGAACCATTGAATCCATTTCAACACTTGATTGGAGGGAAAGGTATTTCAAAAGCAAAGGAAAATGCTAGTGATCATGTTCTTTTATCCTCTGACTCAGACTCTCATGACAGCTACGAGAGTGCTGAGGACGAGGCCTATAAGCCACAAGAGCCGGATGATAGCTCAGATGAATCAGACATTGGATATACTGTTCCTTCACAGAAGAAGAAAGTCAAGAAACCCAATGCAAGGAAGAAGGTCCAGGCTGAGAGTGGAAAGGAAAAAGGGAAGGCCAAGGTCTGTGTTGATGATGATGGATTTGTGGAAGACGTTTCTGATGAAGATGTGGACATTGGATTTGTGGGGGGAGGTATAAAGGGGGATAaccatgatgcttttgatccagggtcagaatcggatggtggcaattcgtggcactctttggagatgaaaacaccacctaattcagaGGATGAGCTGGTTGGAGAAGAAAGTTCAGAGGAGagttgctacatgaggatcttggagactacaagacccatgggtggaacttcatctctgatatgcaaaagGTACTATTATGGTGATCGATTTTCAAAGTTAGGGACTATTATGgccaccacaactgacactgcaaCTGCCTCTGCATCTGCCAGTGCCACTGCAACTGCTACTCCAAATGCAACTACTACTGCTACAGCTACGGCTAATGCTAATATTACCATCAATTCTGCTCCTATTGGTCAAGCATCAGAAATTGATCTGTCACAGCCAATTTGTTCTGAACCAGAAGACTCTCAAAAGTTCACTGAAGTAACCGGGGAaccagccacaagacctgccaaattgcctactagaagaagGATATTATATTATATCAAAGTAAGATGA 1941 0.3725 MSSTDGSGAGIYASIIVVVIMVKIAIVVCVCRERMKNNNKDGSVRPAIPFLTITIDKFLNDIEREKPIRFTDQQLRIATDNYSNLLGSGGFGTVYKGIFSNGTIVAVKVLYGSSDKRIQEQFMAEMGTLGRIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRYLFREIKTLEFEKLHEIAVGTARGIAYLHEECQHRIIHYDIKPGNILLDKNFNPKVADFGLAKLCNRDNTHISMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGRRRNVDTNLSESQEWFPIWVWKKYDGGELGNSKIVAEMEEKQKEMTMRMVRVALWCVQYRPELRPNMSVVVKMLEGSDEIPEPLNPFQHLIGGKGISKAKENASDHVLLSSDSDSHDSYESAEDEAYKPQEPDDSSDESDIGYTVPSQKKKVKKPNARKKVQAESGKEKGKAKVCVDDDGFVEDVSDEDVDIGFVGGGIKGDNHDAFDPGSESDGGNSWHSLEMKTPPNSEDELVGEESSEESCYMRILETTRPMGGTSSLICKRYYYGDRFSKLGTIMATTTDTATASASASATATATPNATTTATATANANITINSAPIGQASEIDLSQPICSEPEDSQKFTEVTGEPATRPAKLPTRRRILYYIKVR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01335 646 SMART serkin_6 80 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01335 646 MobiDBLite consensus disorder prediction 385 411 - -
Aip04g01335 646 CDD STKc_IRAK 86 352 - -
Aip04g01335 646 Pfam Protein tyrosine and serine/threonine kinase 84 350 IPR001245 GO:0004672|GO:0006468
Aip04g01335 646 MobiDBLite consensus disorder prediction 434 449 - -
Aip04g01335 646 ProSiteProfiles Protein kinase domain profile. 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01335 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Aip04g01335 646 MobiDBLite consensus disorder prediction 385 449 - -
Aip04g01335 646 Gene3D Transferase(Phosphotransferase) domain 1 157 358 - -
Aip04g01335 646 MobiDBLite consensus disorder prediction 477 514 - -
Aip04g01335 646 ProSitePatterns Protein kinases ATP-binding region signature. 86 108 IPR017441 GO:0005524
Aip04g01335 646 PANTHER PUTATIVE-RELATED 8 368 - -
Aip04g01335 646 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 368 IPR045874 GO:0004672
Aip04g01335 646 Gene3D Phosphorylase Kinase; domain 1 56 156 - -
Aip04g01335 646 SUPERFAMILY Protein kinase-like (PK-like) 65 351 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01335 Aip-Chr4 23907037 23914871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01335 69 363 Receptor kinase-like Gene Family AT5G38280 43.092 2.25e-75 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Aip04g01335 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01335 - - gmx:100816921 590.882