Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01333 ATGAATGAGCAATACCAGGAGGACGATGACTTTAACCAACAAGAAGAGCTAGTAAGTGACCAAGATATGATGGATGAACAGAATGAATTCGAACAAGATTTCGGAGATGAATTTACTGAGGGAGCATATTTTTTTGAATCTGATCAGTCAGAAGATATCCTTGAAGCTGCTTATGCGCTTGCATTTGATTTTTATCTGAAGTACTCAAAGTCGAAGGGCTTTAGTGCAAAGAAGAGCAAGACCTTCAAGAATAGTATTGGCGAGATTTACAAACAAAAGTTTGTATGTCATAGGCAAGGATTCAGGGAGGAGAAATATTACATGATGGAAATATTACAAACTACTGATACATATATTTGGCTCCTGCGTCAACTCATGTTTGCAATGAAGGGCAAGACCCTGACCTCAATAATAACTTATGGGGCCATGGCGATTAGGAATGCAGTAAGAGATGTATTTCCCGAACTCAGACATAGATTATGCGCTTGGCACCTTATTCGAAATGCAACTAGCAATGTTGAAAATCCATCGTTTACATCTAAATTCAGAAAAATCATGTTGGGAGACTACGAGATTCCCGTGTTTAAGCATAAGTGGGTTCAGCTTATTGAAGAATTTGGCCTTGAGGATAAGCCGTGGGTGATCAACATGTACAAAGAGAAGCATATATGGGCTACTGCATATATAAGAGGAAAATTCTTTGCTGGCTTTAGAACTACCTCAAGATGTGAAGGTTTACACTCAGTTGTGGCAAGAGCTGGATCAATGCGGGTTCTAAACATAGAGAATAACGATGATTGCATAAAGTACATTGTGTGTAAGTATGGGAGGCCCGATTTTATGTGGACCGTTGATTTTCGTCAAGAAGAAATGATCTTCATGTGTACTTGTTTAAGAATGGAGTCATTTGGAATTCCCTGCGAACATATCGTGAAAGTTCTGGTTGACAAAGACATTTGTGAGATTCCCCGGTCATTGGTATTGGATAGATGGACAAAAAAGGTTAAATCAGCACTCAATGATCCAAGTGGGTTCACCAGGGATGCTGTTGTTATTAGTCGTCAAAGTGCCTTGATGAAATTTTCTAAACAATTGGCTGTTGTTGCTGCTAAAGTACTAGAGAGATATGAAGAGACACGTGACCTAATTATGGGATTGTACTCATCTTACAAGGCTGCAGACGAAGGCACTAATCAACCTCAGTCAGGTGTAGCTAAAAGTAGCAATCCGTATGTACATCAAAGCGATGTAGGCTCAGGACAACCATCTAGGAAGAAGCGGCAACGTTGTAGTATTTGTCAAATGGAAGGACATAAGAAGACATGTCCTTGGCAAAAGGACATTGACAACAACGTTATTGAAGATGAAGCTAATGGTTCGGATGATGGCGACGTATATCCAGAACCGACGGCTGAGTTAGATAGTGATAACTAG 1434 0.3996 MNEQYQEDDDFNQQEELVSDQDMMDEQNEFEQDFGDEFTEGAYFFESDQSEDILEAAYALAFDFYLKYSKSKGFSAKKSKTFKNSIGEIYKQKFVCHRQGFREEKYYMMEILQTTDTYIWLLRQLMFAMKGKTLTSIITYGAMAIRNAVRDVFPELRHRLCAWHLIRNATSNVENPSFTSKFRKIMLGDYEIPVFKHKWVQLIEEFGLEDKPWVINMYKEKHIWATAYIRGKFFAGFRTTSRCEGLHSVVARAGSMRVLNIENNDDCIKYIVCKYGRPDFMWTVDFRQEEMIFMCTCLRMESFGIPCEHIVKVLVDKDICEIPRSLVLDRWTKKVKSALNDPSGFTRDAVVISRQSALMKFSKQLAVVAAKVLERYEETRDLIMGLYSSYKAADEGTNQPQSGVAKSSNPYVHQSDVGSGQPSRKKRQRCSICQMEGHKKTCPWQKDIDNNVIEDEANGSDDGDVYPEPTAELDSDN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01333 477 MobiDBLite consensus disorder prediction 1 20 - -
Aip04g01333 477 Pfam SWIM zinc finger 295 314 IPR007527 GO:0008270
Aip04g01333 477 Pfam MULE transposase domain 113 168 IPR018289 -
Aip04g01333 477 MobiDBLite consensus disorder prediction 394 428 - -
Aip04g01333 477 PANTHER OS01G0607050 PROTEIN 113 237 - -
Aip04g01333 477 PANTHER OS01G0607050 PROTEIN 280 379 - -
Aip04g01333 477 MobiDBLite consensus disorder prediction 454 477 - -
Aip04g01333 477 Pfam FAR1 DNA-binding domain 63 106 IPR004330 -
Aip04g01333 477 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 113 237 IPR031052 GO:0006355
Aip04g01333 477 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 280 379 IPR031052 GO:0006355
Aip04g01333 477 ProSiteProfiles Zinc finger SWIM-type profile. 280 318 IPR007527 GO:0008270
Aip04g01333 477 MobiDBLite consensus disorder prediction 394 430 - -
Aip04g01333 477 Coils Coil 470 477 - -
Aip04g01333 477 MobiDBLite consensus disorder prediction 442 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01333 Aip-Chr4 23828624 23830348 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip04g01333 MULE 3.4e-09 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01333 - - ahf:112728364 579.326