Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01289 ATGGCGGATGCGGATAGGCCAGAGAAAGATTCCGGCGGCGGCGAAGAAACGAAGTACCGCGGCGTGAGGAAGAGGCCGTGGGGGAAGTATGGAGCCGAGATAAGGGATCCATCGAAGCCTACCGGAAGGATGTGGCTTGGGACATTCGACACGGCTGAGGAAGCCGCCAGAGCTTATGATCGAGCCGCCATTGCTTTGAGAGGTGGCCTTGCCATCCTTAATTTTCCGGATGAATATCATTCTCATCTCCCATTTATAGCTTCTTCTTCTTCTTCTTATTATTCTTCTACTTCTACTTCCATTGGATCAAGTTCTTCTTCTTCCAGTGCACAACAACGTAGGGAAGTTATTGAGCTTGAATGTTTGGACAATAAGGTTTTGGAGGATCTTCTTGAAGAAGAAGAAAGGAACAGAAGGAAATACTAA 426 0.4742 MADADRPEKDSGGGEETKYRGVRKRPWGKYGAEIRDPSKPTGRMWLGTFDTAEEAARAYDRAAIALRGGLAILNFPDEYHSHLPFIASSSSSYYSSTSTSIGSSSSSSSAQQRREVIELECLDNKVLEDLLEEEERNRRKY 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01289 141 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Aip04g01289 141 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Aip04g01289 141 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Aip04g01289 141 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
Aip04g01289 141 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Aip04g01289 141 PANTHER ETHYLENE RESPONSE FACTOR 3 135 - -
Aip04g01289 141 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Aip04g01289 141 MobiDBLite consensus disorder prediction 1 22 - -
Aip04g01289 141 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Aip04g01289 141 PANTHER DNA-BINDING DOMAIN 3 135 IPR044808 GO:0003700|GO:0009873
Aip04g01289 141 MobiDBLite consensus disorder prediction 90 113 - -
Aip04g01289 141 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01289 Aip-Chr4 21920256 21920681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01289 15 138 AP2-EREBP Transcription Factor Family AT3G23230 58.871 1.78e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip04g01289 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01289 - - adu:107483754 215.312