Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01275 ATGGCTGCGAGGAAGGATTTCATCAGAGATATCAATCCAACCAAGCTTGCCTGGTCCTTGGTTGTGGGGGTTGCTCGATTGTATGAGTTTCCAAGTCAGTGGAACAAGAATGAGGTGTTTAGCTTGGAGTTGGTTTTACAAGATGAGAAGGGTGATAGAATTCATGCAACCGTTTGCAAGCCTGGGTTGGAGTTGTTCAAAAATAGGATAAAGGAGCATTGTGTTTATAGTATGCAAAATTTTATTATTAAGCTTAAGAATGGAAAGGTTAGGACAACTCCTCACAAGTACAAGCTTAACTTTTATACAAAGACTGTGGTGGCAGTCTTACCTATTGAGACTTTTGCTTTTAACCCATTCAAGTTTCGTCCGTTTCATGAACTTGATGAAAATGGTTCAACCGACGGAAATCTATTATTTGATTACATAGGAAAGGTTGTTGGAAAGGAAGAGGTCAGGGGGCTGATTACACGCACTGGTGATGAAACGAAGCTTATTACACTTCAGTTGGAAGATCTAGAGAAGCACAAAATTAAATGTACATTGTTTGAAAAATTGGTCGATGAAGTTCTTCCACATCTCGAGCGAGATGATGGGGAGCCTTTCATAATGGTGGTTCAGCTCTTTAAGTCCAACATGTACTGGAATTCTGTCAATATTCAAAGCACCTACTATGTGTCCACATGTTACTTCAATCCAAACCTTCCTGAGATTGGCACGGATTTTGTTCCCTGTTCACAACGAATTAGTCAGCTGGAAGCTCAACCTCAATACTCAGTCACAGATGAGATCAATGCTAGCATTGTACCAGTGCGCACTATAGAAGAGGAAACGTCATGTTGGATTGTTGGGACCATTATTTCTCTAGAGGTTGGTAAAGATGATTGGTCCTATATGTCGTGTAAGACATGTCTTAAGAAGGTTGTGCAGAGCAAAGATAGGTATTGGTATGATAATTGTAGGCGTGTAGACTTCAAGGTTATGCTAAGGTATAGGCTCCAAGTAATTGTGACTGATGGAAGTGGTTGTCTAAACCTCCTTGTGTGGAACAAAAAAGCAGAGCAAATGATAGAAAAGGCTGCTGAGAAAGTTAACGAATTATCTAAGTGTGAGAAAGGAGAGTCATACCCTAAATACCTGGAGAATATGATTGACAAAAGGCTCTTATTCAAGCTTAACATCACTTACAAGAATATCAATGCTATGGAAGGGGTGTACATCGTCACAAAACTTTTAGACGACGAGTCCCTCATGTTCAGTTATGGTGTGCCTAACTCTTCTTCTGATGCTTCTATGCTAGCTAATATCCCTATAGTTGAAACAGACGAAGATAGCAATGGACATGCTGCAGTTTCCCTGTCCAAGAGCAATTGCGATAGCTCCTATCAAACTCCAGCCAAGAAAACCTCTACTGATGCAGTTGATGACTCCCCAGCAGAAGCAGCCCTGTCTCCAGATGTTCAGGCATCAGCTAACAAAACATTTAAGAGGAATTGTGGAAGAAAAAAGATTGATTGA 1518 0.4058 MAARKDFIRDINPTKLAWSLVVGVARLYEFPSQWNKNEVFSLELVLQDEKGDRIHATVCKPGLELFKNRIKEHCVYSMQNFIIKLKNGKVRTTPHKYKLNFYTKTVVAVLPIETFAFNPFKFRPFHELDENGSTDGNLLFDYIGKVVGKEEVRGLITRTGDETKLITLQLEDLEKHKIKCTLFEKLVDEVLPHLERDDGEPFIMVVQLFKSNMYWNSVNIQSTYYVSTCYFNPNLPEIGTDFVPCSQRISQLEAQPQYSVTDEINASIVPVRTIEEETSCWIVGTIISLEVGKDDWSYMSCKTCLKKVVQSKDRYWYDNCRRVDFKVMLRYRLQVIVTDGSGCLNLLVWNKKAEQMIEKAAEKVNELSKCEKGESYPKYLENMIDKRLLFKLNITYKNINAMEGVYIVTKLLDDESLMFSYGVPNSSSDASMLANIPIVETDEDSNGHAAVSLSKSNCDSSYQTPAKKTSTDAVDDSPAEAALSPDVQASANKTFKRNCGRKKID 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01275 505 CDD RPA1_DBD_B_like 141 238 - -
Aip04g01275 505 Pfam Replication factor-A C terminal domain 291 400 IPR013955 -
Aip04g01275 505 SUPERFAMILY Nucleic acid-binding proteins 8 111 IPR012340 -
Aip04g01275 505 CDD RPA1_DBD_A_like 19 107 - -
Aip04g01275 505 SUPERFAMILY Nucleic acid-binding proteins 275 411 IPR012340 -
Aip04g01275 505 PANTHER BNAC07G49340D PROTEIN 28 493 - -
Aip04g01275 505 Coils Coil 350 370 - -
Aip04g01275 505 MobiDBLite consensus disorder prediction 449 487 - -
Aip04g01275 505 Pfam Domain of unknown function DUF223 43 108 IPR003871 -
Aip04g01275 505 CDD RPA1_DBD_C 275 400 IPR013955 -
Aip04g01275 505 SUPERFAMILY Nucleic acid-binding proteins 120 238 IPR012340 -
Aip04g01275 505 Gene3D - 7 108 IPR012340 -
Aip04g01275 505 Gene3D - 250 416 IPR012340 -
Aip04g01275 505 PANTHER REPLICATION FACTOR A 1, RFA1 28 493 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip04g01275 505 MobiDBLite consensus disorder prediction 449 471 - -
Aip04g01275 505 Gene3D - 115 241 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01275 Aip-Chr4 21210946 21213660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01275 1 401 Core DNA Replication Machinery Family AT5G08020 25.290 4.84e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01275 - - adu:107463979 927.161