Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01273 ATGGAGATGAGCTGCCAAGAAAATGTTGGTGGTAGTGATATTCCTGCATGTTCTACAGCAGGGAATATTTCACATCAAGACCAGCGTTTCAGTAGCTATGTGCAGCAGCCTGCTTTTGTGAGTGGATGGATGTATGTGAATGAACAAGGGCAAATGTGTGGTCCATATATTCAGGAGCAACTATATGAGGGTTTAACTACTGGTTTCTTGCCATTTGAGCTTCCTGTCTATCCTATGATTAATGGCACAATAATGAACCCTGTGCCACTGAATTACTTCAAGCAGTTTCCTGACCATGTCTCTACTGGGTTTGCATATCTGAATTTGGGTTTCTCTGGCTCAAGGGTTCATACAAATGGTCCCTTGTCATCTATGGATATGGCAATATATGGGCAGAATCAATCTTTTGACAATGCTGCTCCTTTGGCTGTTAACTCTGGCTCGCAGTCAGTTCCGCATTCACATGGCAATTACTGCAGTAATGAACCTAACCACCAATTTTCAAAGTCAGAGTTGTTCAACAGTATGATATCTTCTCAGATGTTAGGTGAAGAACGTTGTTGGCTTTATGAGGATGAAAAGGGCATGAAACACGGTCCACATTCTATTTCAGAATTGATTTCCTGGCACCATCATGGATATCTTCAAGACTCGTCAATGATATCTCATTTTGGCAATAAGTATGGTTCCTTTCTGCTAGTTGCTGCTGTAAATGCTCTGAAAGGGGATACATCTGGAACCATTTGTAGATCAGGTTCCAAAAACAATGAGCTTGGTGGTACGGTAAACTTAATCTGTGAAATATCTGAGGACATTTCTTCCCAATTGCACTTGGGTGTCATGAAAGCTGCCCGCAGAGTTGTGCTCGATGGGGTTATAAGTGATATTATTGCAGAATTTTTTACTGAAAAGAAACACAAGAGGCAGAAGCTTGATTCAACTAACCTGGCTTCTGAGACCTCTGTGGTTGACAGCAAAAGGTCAAATGTTGCTGTGGAGATTAGTAAAGATACTGCTGTTCCGAGTGAGCATGCATCTTCCCATATTGCAGATGATCAGACTTGTCTTGAAATTTCTAGACCATCTTCAACAAGTATTAAATCGGTTGGAAGTGTTGAGAACTTTTGGTGGTCTTATGCTGTTGTACGTAAAGTACTTGTTGATTATTGCATGCAAGTCACGTGGAATGCTGTATTTTTTGACCCTCTAGCAGAGTACTTATGTTCCTGGAGGAAAAAGAAACTTTGGTCTCATCCTAATCTTCAAATATTTGTTAATGGTTATGGAGAATATGATGGAAAAACTAAATCTGAAGCCGTGAGTATCTGTAATCAGTTTGGAGTGCTGACAACAGGAACAGATTCTCATTCTAAGTTACCTTCTTTATCTTCTAATGTACCCAAAGATGGAAATTTAATGGAAGGTCAAAGAGTTTCATGCACTTATAGTAACTCCAAAAATTTGACATGCATTATTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCAAAGGTGTCTTTAGCTGAATACTTTCGAAGTTTTGTTGAAAAGGAAGTGAACAAAATAATTCATTCCCCTCATGAAGACAAATTGAGTAAGGTTGCTGTTAGTGTCTCTGGTTTCTCAGAACTACACACTGGTGAAACTCCTATGAAGGAAATTCTAAATGACAAGTTAGTAGCTACTGTTAAGGCTGAAGATTCAGTTTGTGAGCCTTCATTAGCAAATCATATGTCTAATGTATTCTCGAATGCATTTGAGGAGTTGTATGGAGGTGTAGAAGTAGTTGATGAAGGGGAAATTGGTGAACTTCCACCTGGATTTGAAGAGAACTTGCACACAATTTTCCCACCACCGAATTTGAAGATTCGACCTTCAAGGGTAGCTGAATGTAATCCTAAGATTACAGAATATGTTGCAACTGCACTGTGCCGACAAAAGTTGCATAATGAAGTCCTAGAAGAGTGGAAATCCGCTTTTTTTTATCCTACATTGAATCAAGCTTTTATGTCTAATAAGAAACGCAGTCATTCTGGTATTCATGAGAAAGGAAAAGCAAAGAAAGCAAGGAAGGAACCTTTAAATGATGCTACTTCTGGACTGGGAAAGATGAAAGAAGGAGCAAAAGGTTCTTCTGGAGTTCCTCTAGTTAATGGAAAGTATACATACCACCGCAAGAAACTGTCACACAAAGAGTTGTGTTCCTCTCAATCTGCTTCAGTGGATGATTCTAGGCCAGGAAAGCAGAATGTGTGTAAGTTAAGGAATTATGTTTTGGGAGATCTGAATGAAACTGCAAAAGTCAAAATAGCTGCTAAGCATGGAAAGGCTAGTGTGGTTAAAGGGAAGAAAGATAAATCTAATAAGAGCAGGTCATCTATCATTGTCAATGGTAGCACAGATGGTGATCGATTGTCCTTGAAGAATAAAACTAGTTCGAAAGCATTGAAACTTTCACGTACCGATGGTGTTGTGGATGCCGTAAAATCTAATGAAAGGAGGCTTTCTGCGTCAACAAATAATAGTGTTGGAATGAAGAAGGTGGTTAAAAGCAATACTGAGGATGTCCTAAAATCAAATGAAAAGAAGCTTTCAGCATCAACAAATAATAGTGTTTCCATGAAGAAGGTGGCTAAAAGCAATTGCAGTGATGGCACCATTAAGGGGAAGACTGCTGGTCATTGCTCCAAACAGAGACCAAGTGCAAATAAAATGTCGAAACAAAAAAGGAAACATTCAACAGATGGTATGCCATCCTTACATCCTGCCAAGTCTTTGAAAATTTCAAACGATGGTGCAAAGCATGGAGCAAGCAAACATGCTACTGTTGCAAGGAGGAATTCTGCCAAATCCAAGCCATTGAATGTATCTCCTAGATCTGATGGATGTGCTAGGACTTCCATTGATGGGTGGGAATGGCATAGATGGTCTCAAAGTGCTACTCCTGCATATAGAGCACGTGTCAGGGGAATTGCCTGTATACAAAACAAGTGCATAGATTCAGATAATAATTTATTGCAGCTATCAAATAATAAGGGTCTTTCTGCAAGAACAAATAGGATGAAATTGCGCAACCTTCTTGCTGCTGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCAAGGAAAAAACGATTACGTTTTCAAAGGAGCAAGATACATGACTGGGGTCTTGTTGCAATGGAGCCAATAGAGGCAGAGGACTTCGTGATTGAATATGTTGGAGAACTAATTCGTCCTCGGATATCTGATATCCGTGAACGTCAGTATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCCAATTGCTATACAAAGGTCATCTCTTTCGAGGGTCAAAAGAAGATTTTCATATATTCAAAACGGCATATTGCTGCTGGTGAAGAGATTACTTATAATTATAAGTTCCCGTTGGAGGATAAAAAGATTCCCTGCAACTGTGGTTCCAGAAAGTGTCGTGGATCACTTAATTAG 3558 0.3963 MEMSCQENVGGSDIPACSTAGNISHQDQRFSSYVQQPAFVSGWMYVNEQGQMCGPYIQEQLYEGLTTGFLPFELPVYPMINGTIMNPVPLNYFKQFPDHVSTGFAYLNLGFSGSRVHTNGPLSSMDMAIYGQNQSFDNAAPLAVNSGSQSVPHSHGNYCSNEPNHQFSKSELFNSMISSQMLGEERCWLYEDEKGMKHGPHSISELISWHHHGYLQDSSMISHFGNKYGSFLLVAAVNALKGDTSGTICRSGSKNNELGGTVNLICEISEDISSQLHLGVMKAARRVVLDGVISDIIAEFFTEKKHKRQKLDSTNLASETSVVDSKRSNVAVEISKDTAVPSEHASSHIADDQTCLEISRPSSTSIKSVGSVENFWWSYAVVRKVLVDYCMQVTWNAVFFDPLAEYLCSWRKKKLWSHPNLQIFVNGYGEYDGKTKSEAVSICNQFGVLTTGTDSHSKLPSLSSNVPKDGNLMEGQRVSCTYSNSKNLTCIIESVENELHFSSKVSLAEYFRSFVEKEVNKIIHSPHEDKLSKVAVSVSGFSELHTGETPMKEILNDKLVATVKAEDSVCEPSLANHMSNVFSNAFEELYGGVEVVDEGEIGELPPGFEENLHTIFPPPNLKIRPSRVAECNPKITEYVATALCRQKLHNEVLEEWKSAFFYPTLNQAFMSNKKRSHSGIHEKGKAKKARKEPLNDATSGLGKMKEGAKGSSGVPLVNGKYTYHRKKLSHKELCSSQSASVDDSRPGKQNVCKLRNYVLGDLNETAKVKIAAKHGKASVVKGKKDKSNKSRSSIIVNGSTDGDRLSLKNKTSSKALKLSRTDGVVDAVKSNERRLSASTNNSVGMKKVVKSNTEDVLKSNEKKLSASTNNSVSMKKVAKSNCSDGTIKGKTAGHCSKQRPSANKMSKQKRKHSTDGMPSLHPAKSLKISNDGAKHGASKHATVARRNSAKSKPLNVSPRSDGCARTSIDGWEWHRWSQSATPAYRARVRGIACIQNKCIDSDNNLLQLSNNKGLSARTNRMKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVAMEPIEAEDFVIEYVGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISFEGQKKIFIYSKRHIAAGEEITYNYKFPLEDKKIPCNCGSRKCRGSLN 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01273 1185 SMART set_7 1046 1169 IPR001214 GO:0005515
Aip04g01273 1185 Pfam SET domain 1058 1162 IPR001214 GO:0005515
Aip04g01273 1185 ProSiteProfiles SET domain profile. 1046 1163 IPR001214 GO:0005515
Aip04g01273 1185 MobiDBLite consensus disorder prediction 673 715 - -
Aip04g01273 1185 Gene3D SET domain 984 1185 IPR046341 -
Aip04g01273 1185 SUPERFAMILY SET domain 1041 1182 IPR046341 -
Aip04g01273 1185 ProSiteProfiles GYF domain profile. 185 241 IPR003169 GO:0005515
Aip04g01273 1185 MobiDBLite consensus disorder prediction 862 887 - -
Aip04g01273 1185 CDD SET_SETD1 1034 1181 - -
Aip04g01273 1185 SMART PostSET_3 1169 1185 IPR003616 -
Aip04g01273 1185 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 1 1185 IPR044570 GO:0042800|GO:0051568
Aip04g01273 1185 Gene3D - 174 250 IPR035445 -
Aip04g01273 1185 ProSiteProfiles Post-SET domain profile. 1169 1185 IPR003616 -
Aip04g01273 1185 SUPERFAMILY GYF domain 180 237 IPR035445 -
Aip04g01273 1185 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 1 1185 - -
Aip04g01273 1185 MobiDBLite consensus disorder prediction 852 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01273 Aip-Chr4 21178582 21185792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01273 1045 1185 C2H2 Transcription Factor Family AT2G23740 34.969 2.16e-17 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip04g01273 SET 4.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01273 - - aip:107636228 2376.67