Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01271 ATGGCGCCGAGTAGAAGCAGAGATGTGCAGCTCACTTCGATCGCCGGCGCCGAAGACGATGACGCCGGCGACTTGGAGGAGGTGCGGCTACTGGACTCCTACGATTCCCGCGACGGAATTGACGACGGCGGAATGAGGCGGATTCAGGTGAGGGTTACCGGGATGACCTGCGCTGCATGCTCCACCTCCGTCGAATCGGCTCTCTGCGCCGTCGACGGTGTAATTACCGCCTCCGTTGCTCTTCTTCAGAATAAAGCCGATGTAGTTTTCAACCCAGCTCTGGTCAAGGATGAAGACATAAAAAATGCAATTGAAGATGCGGGGTTTGAAGCAGAAATATTACCAGAACCCAGCACAACTGGAAAGATGCCACATGGAACACTTGTGGGACAATTCATAATCGGAGGTATGACATGTGCGGCCTGCGTAAATTCTGTGGAAGGCATTTTGAGAGATCTTCCAGGGATCAAGAGGGCTGTAGTGGCTTTGGCTACTTCGTTAGGCGAAGTTGAATATGATCCGAGTGTAATAGGTAAAGATGATATAGTCAATGCAATTGAAGATGCTGGTTTTGAAGGTTCATTTGTACAGAGCAGTGAACAGGATAAAGTAGTTTTTGAGGTGGTTGGTGTGTATAGTCTGATTGACACTCAAGTTTTAGAAGGTGTGCTTGGCAGCATCAAAGGAGTAAGGCAATTTCGTTTTGATCAGATATCAGGTCAATTGGATATTGTCTTTGATCCTGAAGTTCTCAGTCCTAGATACTTAGTTGATGGAATTGAAGGGGGAAGCAATGGAAAATTTAAATTACGTGTTAGAAACCCTTATACAAGGATGGCTTCTAAAGATGTTGAGGAGAGCTCAACTATGTTTCGGCTCTTCATGTCTAGTTTGCTTCTTAGTATTCCTCTCTTCTTCATGAAGCTAGTATGTCCTCATATACCAATGATATATTCTTTATTACTCCGGAGATGCGGGCCTTTCCTTATGGGTGATTGGTTGAAGTGGGGATTGGTGAGTATCATTCAATTTGTGATTGGGAAGCGTTTCTACATTGCTGCTACCAGAGCTCTTAAAAACGGTTCGACAAACATGGATGTTCTAGTTGCTGTAGGAACTACTGCATCTTATGCTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTTACTGGATTTAGGGCTCCAGTATACTTTGAAACAAGTGCCATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGGAAGACATCAGATGCCATCAAGAAGTTAGTAGAACTTGCTCCTGCAACAGCTTTATTGATTATCAAAGATAAAGGTACCTTTCAACTTCAGTGTATTTATGTCAATGAAAGCATGGTAACAGGGGAAGCTGTACCTGTTCAGAAGGAGGTGAATGCATCGGTGATTGGTGGTACAATAAATTTGCATGGTGTCCTTCACATTCAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATTAGTTTAGTTGAGACAGCACAGATGTCCAAAGCTCCAATTCAGAAATTTGCTGATTATGTTGCAAGTATATTTGTTCCTACAGTTGTTTCTTTGGCATTATTGACATTTTTCTCTTGGTATGGTGCTGGGTCAGTTGGAGCTTATCCTGAGGAATGGCTGCCGGAAAATGGAAATCACTTTGTTTTTGCTCTAATGTTCTCAATAGCTGTCGTAGTGATTGCATGTCCCTGTGCGCTTGGCTTGGCAACACCAACAGCTGTCATGGTGGCGACAGGGGTTGGGGCTAACAATGGAGTGCTAATTAAAGGAGGAGATGCTTTGGAAAGAGCTCAGATGGTGAAGTATGTGATATTTGATAAAACAGGAACTCTGACACAAGGAAAAGCTAGTGTTACTACTGCCAAGACATTCACAGGAATGCAACGTGGAGAATTTCTCAGATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACATCCATTGGCACAAGCAATAGTAGAATATGCACGTCATTTTCATTTCTTTGATGACTCTTCTGCTTCTAATGGTGCCCAAAATGGTGCCAAGGAGTTGAAATCTGGGTGGCTTTTTGATGTCTCAGATTTCATTGCTCTTCCTGGAAAAGGTGTTCAATGCCTTATAGATGGGAAACCTATTTTGGTAGTTGGTAACAGGAAGCTCATGGCAGAAAGTGGCATAGATATCTCAGATGAAGTGGAAAATTTTGTGGTAGAGCTGGAAGAAAGTGCAAGGACAGGGGTACTAGTAGCATATGATGGTATAGTAATTGGAGTCTTGGGGATTTCAGATCCACTAAAGAGAGAAGCATCTGTAGTTATAGAAGGACTCCAGAAAATGGGTGTCAGACCTGTTATGGTTACAGGAGATAACCGGAGAACTGCTCGCGCTGTGGCCAAGGAGGTTGGCATCCAAGATGTTAGGGCAGAGGTTATGCCTGCTGGAAAAGCTGATGTTGTTCAATCATTCCAAAAAGACGGGAGCATAGTAGCAATGGTTGGTGATGGTATCAATGACTCTCCTGCATTAGCTGCTGCTGATGTTGGTATGGCAATAGGGGCTGGAACAGATATTGCAATAGAAGCTGCTGATTACGTGTTGATGCGAAACAACCTGGAAGACGTGATCACCGCCATCGATCTTTCCCGGAAGACCTTCTCCCGTATTCGGTTGAACTATGTATTTGCAATGGTGTATAATGTTGTGGCTATACCAGTTGCTGCTGGGGCTTTGTATCCTTCACTGAGGATCAAGCTGCCACCATGGGTTGCTGGTGCATGCATGGCTCTATCTTCTGTAAGTGTTGTATGTTCTTCTTTGCTTCTCAGAAGATATAGAAGACCCAGACTTACTCAAATACTTGAAATAGTTGTAGAGTAA 2901 0.4378 MAPSRSRDVQLTSIAGAEDDDAGDLEEVRLLDSYDSRDGIDDGGMRRIQVRVTGMTCAACSTSVESALCAVDGVITASVALLQNKADVVFNPALVKDEDIKNAIEDAGFEAEILPEPSTTGKMPHGTLVGQFIIGGMTCAACVNSVEGILRDLPGIKRAVVALATSLGEVEYDPSVIGKDDIVNAIEDAGFEGSFVQSSEQDKVVFEVVGVYSLIDTQVLEGVLGSIKGVRQFRFDQISGQLDIVFDPEVLSPRYLVDGIEGGSNGKFKLRVRNPYTRMASKDVEESSTMFRLFMSSLLLSIPLFFMKLVCPHIPMIYSLLLRRCGPFLMGDWLKWGLVSIIQFVIGKRFYIAATRALKNGSTNMDVLVAVGTTASYAYSVCALLYGALTGFRAPVYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLIIKDKGTFQLQCIYVNESMVTGEAVPVQKEVNASVIGGTINLHGVLHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTFFSWYGAGSVGAYPEEWLPENGNHFVFALMFSIAVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKASVTTAKTFTGMQRGEFLRLVASAEASSEHPLAQAIVEYARHFHFFDDSSASNGAQNGAKELKSGWLFDVSDFIALPGKGVQCLIDGKPILVVGNRKLMAESGIDISDEVENFVVELEESARTGVLVAYDGIVIGVLGISDPLKREASVVIEGLQKMGVRPVMVTGDNRRTARAVAKEVGIQDVRAEVMPAGKADVVQSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMVYNVVAIPVAAGALYPSLRIKLPPWVAGACMALSSVSVVCSSLLLRRYRRPRLTQILEIVVE 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01271 966 ProSitePatterns Heavy-metal-associated domain. 52 82 IPR017969 GO:0046872
Aip04g01271 966 Gene3D - 446 509 - -
Aip04g01271 966 PRINTS Copper-transporting ATPase 1 signature 102 122 - -
Aip04g01271 966 PRINTS Copper-transporting ATPase 1 signature 47 72 - -
Aip04g01271 966 PRINTS Copper-transporting ATPase 1 signature 73 96 - -
Aip04g01271 966 PANTHER HEAVY METAL P-TYPE ATPASE 7 446 - -
Aip04g01271 966 SUPERFAMILY Calcium ATPase, transduction domain A 452 505 IPR008250 -
Aip04g01271 966 CDD HMA 49 112 IPR006121 GO:0046872
Aip04g01271 966 SUPERFAMILY HAD-like 618 946 IPR036412 -
Aip04g01271 966 ProSitePatterns E1-E2 ATPases phosphorylation site. 621 627 IPR018303 -
Aip04g01271 966 Pfam haloacid dehalogenase-like hydrolase 615 854 - -
Aip04g01271 966 ProSiteProfiles Heavy-metal-associated domain profile. 203 261 IPR006121 GO:0046872
Aip04g01271 966 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 452 671 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip04g01271 966 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 713 919 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip04g01271 966 ProSitePatterns Heavy-metal-associated domain. 134 163 IPR017969 GO:0046872
Aip04g01271 966 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872
Aip04g01271 966 PANTHER ATP7, ISOFORM B 452 959 - -
Aip04g01271 966 PRINTS P-type cation-transporting ATPase superfamily signature 787 797 - -
Aip04g01271 966 PRINTS P-type cation-transporting ATPase superfamily signature 455 469 - -
Aip04g01271 966 PRINTS P-type cation-transporting ATPase superfamily signature 840 859 - -
Aip04g01271 966 PRINTS P-type cation-transporting ATPase superfamily signature 619 633 - -
Aip04g01271 966 PRINTS P-type cation-transporting ATPase superfamily signature 765 776 - -
Aip04g01271 966 PRINTS P-type cation-transporting ATPase superfamily signature 863 875 - -
Aip04g01271 966 Pfam Heavy-metal-associated domain 132 192 IPR006121 GO:0046872
Aip04g01271 966 Pfam Heavy-metal-associated domain 50 110 IPR006121 GO:0046872
Aip04g01271 966 SUPERFAMILY Calcium ATPase, transmembrane domain M 384 928 IPR023298 -
Aip04g01271 966 TIGRFAM TIGR00003: copper ion binding protein 48 111 IPR006122 GO:0005507
Aip04g01271 966 TIGRFAM TIGR00003: copper ion binding protein 132 192 IPR006122 GO:0005507
Aip04g01271 966 Gene3D - 45 116 - -
Aip04g01271 966 CDD HMA 131 192 IPR006121 GO:0046872
Aip04g01271 966 Gene3D - 130 195 - -
Aip04g01271 966 ProSiteProfiles Heavy-metal-associated domain profile. 129 195 IPR006121 GO:0046872
Aip04g01271 966 MobiDBLite consensus disorder prediction 1 20 - -
Aip04g01271 966 PANTHER ATP7, ISOFORM B 7 446 - -
Aip04g01271 966 SUPERFAMILY HMA, heavy metal-associated domain 126 199 IPR036163 GO:0046872
Aip04g01271 966 Pfam E1-E2 ATPase 451 598 - -
Aip04g01271 966 PANTHER HEAVY METAL P-TYPE ATPASE 452 959 - -
Aip04g01271 966 Gene3D - 721 771 IPR023299 GO:0000166
Aip04g01271 966 Gene3D - 626 720 IPR023299 GO:0000166
Aip04g01271 966 SFLD C1.7: P-type atpase like 601 892 - -
Aip04g01271 966 SFLD p-type atpase 601 892 IPR044492 -
Aip04g01271 966 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 454 949 IPR027256 GO:0006812|GO:0016021|GO:0019829
Aip04g01271 966 CDD P-type_ATPase_Cu-like 292 936 - -
Aip04g01271 966 Gene3D - 586 897 IPR023214 -
Aip04g01271 966 SUPERFAMILY HMA, heavy metal-associated domain 43 117 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01271 Aip-Chr4 21063061 21068971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01271 1 966 Primary Pumps ATPases AT5G44790 71.457 0.0 1425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01271 K17686 - gmx:100804960 1521.91