Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01262 ATGGCTAAACTTGAGTCTGATCACACTCCCCCACCCACAATGAGCCCTACCATAAGCAAACCATGTTACCCTCCACAAAATTCAGGTGGCTTCAACTTAATGGTTATTTTGGCGGCCGTTCTATGCGCCTTCCTTTGCGCGCTAGGCCTCCTCAACACCATGCTACAATGCGCGAGTCGCGTCCTCACGGAGCCTTTACAATGGATTGCTACCAGAGGGATCAACTCAGGGCTCAAGAAGAAAGAAATGGTATCTTTGCCAACCTCAATTTATAATAGTAACAGCCATAATAATAATAATAACAATAGTAATAGTAGTAGTACTAGTAGTAATTCAGGGTCATCACCATCTTCAGGTTCTCCTAGTTGTGCAATTTGCCTAGCTGATTTCTCTGATGGAGACAAGATAAGATTTCTTCCAAAGTGTAATCATCGTTTTCATGTGGCTTGCATTGATAAGTGGCTTCTTTCCCATTCCTCTTGCCCAACATGTAGGAACTTCCTCAAGTCCAATGATTCATCACACCCTTTTCATATTCTCATAGCTTAA 549 0.4262 MAKLESDHTPPPTMSPTISKPCYPPQNSGGFNLMVILAAVLCAFLCALGLLNTMLQCASRVLTEPLQWIATRGINSGLKKKEMVSLPTSIYNSNSHNNNNNNSNSSSTSSNSGSSPSSGSPSCAICLADFSDGDKIRFLPKCNHRFHVACIDKWLLSHSSCPTCRNFLKSNDSSHPFHILIA 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01262 182 Pfam Ring finger domain 122 165 IPR001841 -
Aip04g01262 182 SUPERFAMILY RING/U-box 122 173 - -
Aip04g01262 182 SMART ring_2 123 164 IPR001841 -
Aip04g01262 182 MobiDBLite consensus disorder prediction 1 20 - -
Aip04g01262 182 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 22 170 - -
Aip04g01262 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 170 IPR013083 -
Aip04g01262 182 MobiDBLite consensus disorder prediction 89 117 - -
Aip04g01262 182 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Aip04g01262 182 PANTHER OS06G0666500 PROTEIN 22 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01262 Aip-Chr4 20935316 20935864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01262 24 168 C3H Transcription Factor Family AT2G17450 41.935 2.21e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01262 - K19040 ahf:112794746 263.462