Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01241 ATGGCTTCTCCCCTTCTTCACCAGCCAACGCAGTTCTTTTTCTCCAACACCCAGTTAAAAGGACCGAGCCATGGATTCTTGTGCCGACCCCCTTGTTCTTCATTTGGCGCCTCTCATTCTGAAAACAAAGCTCGACCCATTAGAGCTTCGGTTGATGCACCCACATTTCCATTGTTTCAGACTCCAAAACAGCATGATTCAGCCTCTGAGTTGGAGCCTGCAGATCCTGATTTCTACAAGATCGGTTATGTTCGAAGCATGAGAGCTTACGGAGTTGAGTTTAAGGAAGGGCCGGATGGATTTGGTGTGTATGCTTCCAAAGATGTGGAACCTCTCCGGCGAGCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAACTCCCATGGATGTTTTTCCCAGATATAATTCCTATAGGTCATCCAATATTTGATATTATCAACTCTACAGATCCAGAGACAGATTGGGACTTAAGGTTAGCTTGCCTCCTCCTATATGCATTTGATTGCGAAGACAACTTTTGGCAGTTGTATGGTGACTTCTTACCAAGTGCAGATGAGTGTACCAGCTTACTTCTAGCTTCAGAGAATGAACTTTCAGAGCTTCAAGATCCCGATCTTGCTTCTACTATGAGAAACCAGCAACATCGAGCCCAAGAATTCTGGGAAATGAACTGGCACAATTCTGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCGAAGGTTCTTGTGGGCAGTGGGTATTGCACAGTCACGATGTATTAACATGCAGACGAGAATTGGTGCATTAACTCAAGATGCAAATATGCTTATTCCTTATGCTGATATGCTGAACCATTCCTTTGAGCCAAATTGCTTTCTGCATTGGCGTTTTAAGGACAGGATGCTTGAAGTTCTTATAAATGCTGGCGAGCAAATTAAAAGGGGAGATGAGATGACAATTAATTACATGAGCGGACAGAAGAACGAGATGCTAATGCAAAGATATGGATTTTCATCACCGGTGAATCCTTGGGATGTGATCAAATTCTCAGGCAATGCAAAGATTCATCTGGATTCCTTTTTGTCCGTCTTCAATATATCTGGCCTTCCCGAAGAGTATTACCATAACAAATGTCTAGCAAACGATGGCGATACTTTTGTTGATGGAGCTGTTGTAGCTGCAGCACGAACATTGCCAACTTGGTCGGACAAGGATGTGCCTCCAATCCCTAGTGCAGAAAGAATGGCAGTAAAGGAGTTGCAACAAGAATGTCGACAGATGCTTGCTCAATACGCTACAACCTCTAAGCAAGACGAGAAATTGCTTGATTCTTTGCCAAACGCTCCTAGGACGCTAGAAGCTGCAATTAAGTATAGATTGCACCGGAAATTGTTCATTGAGAAGGTTATCCAAGCATTGGAGATCTATCAAGATAAGATACTTTTCTGA 1452 0.4304 MASPLLHQPTQFFFSNTQLKGPSHGFLCRPPCSSFGASHSENKARPIRASVDAPTFPLFQTPKQHDSASELEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPIGHPIFDIINSTDPETDWDLRLACLLLYAFDCEDNFWQLYGDFLPSADECTSLLLASENELSELQDPDLASTMRNQQHRAQEFWEMNWHNSAPLKIKRLARDPRRFLWAVGIAQSRCINMQTRIGALTQDANMLIPYADMLNHSFEPNCFLHWRFKDRMLEVLINAGEQIKRGDEMTINYMSGQKNEMLMQRYGFSSPVNPWDVIKFSGNAKIHLDSFLSVFNISGLPEEYYHNKCLANDGDTFVDGAVVAAARTLPTWSDKDVPPIPSAERMAVKELQQECRQMLAQYATTSKQDEKLLDSLPNAPRTLEAAIKYRLHRKLFIEKVIQALEIYQDKILF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01241 483 Gene3D set domain protein methyltransferase, domain 1 84 338 - -
Aip04g01241 483 Pfam Rubisco LSMT substrate-binding 413 464 IPR015353 -
Aip04g01241 483 Gene3D - 358 481 IPR036464 -
Aip04g01241 483 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 52 476 - -
Aip04g01241 483 SUPERFAMILY SET domain 99 339 IPR046341 -
Aip04g01241 483 Coils Coil 418 438 - -
Aip04g01241 483 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 52 476 - -
Aip04g01241 483 CDD SET_LSMT 91 338 - -
Aip04g01241 483 Pfam SET domain 100 323 IPR001214 GO:0005515
Aip04g01241 483 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 335 475 IPR036464 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip04g01241 SET 3.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01241 - - gmx:100790985 802.357