Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01240 ATGAGTTCTTCTGGAGCCATGCAAAAAAAGCATGAGGAGAATAGTTTCCTTGATACCAAGACAATGGCAGAAGGTTCAGACCCATCACCATCACCAACAAACATGGTTGCAGCTGCAGATGAAGGAAACACCGAAAACAGCAATGAAGAGAATCTCAATCTCTCTTTGGATGAGTTCTATCACCAAAACCACAATCCACCACCACAAACAACAGAAGGTGTCTCAACCTTTGAGAATGGAACATCTTCCATATCTATGGACATAGAAAACACACAGAATCTGAGTTTGAACATCGGCAATTCCTACAGCAACAAGGGTACTACTACCCCCTTGGTGCAAGAGATTGTGATTGATCATGATGATGCATTTCACTATGAGAAATCCAATTGGGACTCTACCATTCATGAATTGCTTGATCTTGGATTTTCTAACCACAATGAAAATCAGCAAGCACATGATCACCAACAATTTCAGCTATGTGAGGCACAAAATTGTAGTCAAAGTTACCATTCATCAGATCTTCTTCAGCTTCATTTGAATCCGAATCAAATCCCTTGCATCACAAACCCAATTCAGAATAATACACCAAACTTTCAACATTCCATGGGGTTCCTTGGTGACCTTCCTGTGGGATCAGACTATGACACTTCACTTCATTTGAATCCAGCCTTTGGAGTTGGAGAGTTGTTTCCGTCTCTCCCGCATGGCTACACTAGGCTGACTGATTCGAGGAGCGGATTCCTCTTTGGTGGAGGGGATGAAATGGAGGGAAATGGAGCTTGTTATCAAGATGGAGATGGAAGCCAGGTTGACATTGGAGTGATGGAGTTCAACAGAGCCAGAGCTTGTTCTGTTGGTGGCAGAGGGAGGAGAGGACAAGGTACCATGCCAATTGATAAACAAAGAAGAGAGCAATTGAATGACAAATACCAAATCTTGAGAAGTTTGATCCCAAGCCCCACTAAGGTAGATAGAGCATCTGTGGTGGGAGATGCAATTGATTACATAAGAGAACTGATTAGAACAGTGAATGAGCTCAAGTCATTGGTGGAGAAGAAAAGGATTGGGAGGGAGAGGTTCAAGAGACACAAAGATGAAAATGATGCTTCAGAGAGCTGTAACATAAAACCTTATGGTGATGGGTCCATAAGAACCTCATGGCTTCAGAGGAAATCGAAAGACAGCGAGGTTGATGTCCGAATAATCGATGATGAAGTTATAATCAAGATGGTTCAGAGGAAGAAGATCAATTGCATGCTTTTTGTCCCCAAGGTCCTGGATGAACTTCAGTTGGATCTTCACCATGTTGCTGGTGGCCATGTTGGAGAATATTGCAGTTTCTTGTTCAATAGCAAGATAATTGAAGGTTCTTCAGTCTATGCAAGTGCCATTGCCAACAGGGTGATTGAGGTTATGGACACTCAGTATGCAGCAGCAGCTGTTCCACACAATAGCAGCTATTAG 1464 0.4269 MSSSGAMQKKHEENSFLDTKTMAEGSDPSPSPTNMVAAADEGNTENSNEENLNLSLDEFYHQNHNPPPQTTEGVSTFENGTSSISMDIENTQNLSLNIGNSYSNKGTTTPLVQEIVIDHDDAFHYEKSNWDSTIHELLDLGFSNHNENQQAHDHQQFQLCEAQNCSQSYHSSDLLQLHLNPNQIPCITNPIQNNTPNFQHSMGFLGDLPVGSDYDTSLHLNPAFGVGELFPSLPHGYTRLTDSRSGFLFGGGDEMEGNGACYQDGDGSQVDIGVMEFNRARACSVGGRGRRGQGTMPIDKQRREQLNDKYQILRSLIPSPTKVDRASVVGDAIDYIRELIRTVNELKSLVEKKRIGRERFKRHKDENDASESCNIKPYGDGSIRTSWLQRKSKDSEVDVRIIDDEVIIKMVQRKKINCMLFVPKVLDELQLDLHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIEVMDTQYAAAAVPHNSSY 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01240 487 Gene3D - 296 364 IPR036638 GO:0046983
Aip04g01240 487 MobiDBLite consensus disorder prediction 19 49 - -
Aip04g01240 487 MobiDBLite consensus disorder prediction 61 81 - -
Aip04g01240 487 CDD bHLH_AtMYC1_like 297 359 IPR045896 -
Aip04g01240 487 PANTHER TRANSCRIPTION FACTOR BHLH91 13 481 - -
Aip04g01240 487 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 352 IPR036638 GO:0046983
Aip04g01240 487 MobiDBLite consensus disorder prediction 1 49 - -
Aip04g01240 487 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 339 IPR011598 GO:0046983
Aip04g01240 487 SMART finulus 296 345 IPR011598 GO:0046983
Aip04g01240 487 PANTHER TRANSCRIPTION FACTOR BHLH91 13 481 IPR045895 GO:0006355|GO:0048658
Aip04g01240 487 Pfam Helix-loop-helix DNA-binding domain 298 339 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01240 Aip-Chr4 20508930 20511491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01240 214 484 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 45.667 4.94e-74 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip04g01240 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01240 - - gmx:100782512 498.819