Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01225 ATGGCATCATCACAAGTTGAAATTGCTTCGTCTTCGCCCTTTGGTTTGGTTCTGAGGGACCGTAACCACCGTGGTGATGGATGCAGAGAAAGCAATGTTGTTAATAAGGCCACACATGCTGCTCTTCAAAGGAACATCAAGAACTTCGTCATGGACCACCTTAACATGTCCATGTCCATGTCCAACTCCGATTCAACAAGAAATCTCAACGAGAACAATTCTGCCCATTGGAACGAAATTCATCATAATCAAGATCGGCGCCACCACCGGCGCCACCGCAACGTATCGAATCTTCATGTCTCAAATGCCATGGAGTTCAAGGATGGATCCTCATTGAACTCTTTGATTAGCCCGAGACAAACCCGGCTTCTTGATCGCTGGGCCGCGAAACAAGCCCGGGAGATTGTTTCAAATTTAGAGAGTGAGGCTGGGTTGTTGTCAATTGATAATAACAAGAAAGAACTTGGAAGCACAGGTAGTTGCAACTCTGATGGTGATGATAATAAGTGTGTAGATATCTCGAACCTTGCTGCTTCTTCACTTGTTCAGATATGGGAGAAGAGGCTCAGTGGATCCAAGCCTGAAACGACGGCGTCTAATGGCGCCAAAACTAGTCCCACTGCTGTTACTTCCACCAATAATTGTGATTCTGAGGCAGGGGAATCTTCTTCCTGCGCCGTGGCGAACGAGGACTGGGAAACACACAGTGATCAGTCCTTTTCGCCACAATCGCGGTGGTCGTCTTGCGAGACTGCAACAACAGAGGCAGAAAGGCCGGTTTCTGTTGCAGACATAATAAAGAGGCTAACTACACCAAGTGTCCATGGCGATGACAATGAATCTGAGGGGTTTATTAGCAGCGTGGCAAGCTCTCCTTGCAGAGATTTAGCACCGGAGAATTCTGAGAGGAGGGCTTTTCCCCTCATGATTGGTGCCCCGGGAAGGATTCGAGGCCGCCGGATTTTCACCGATATGCTTATGCAGCTGGAGAGGGACCGCCGAGGGGAGCTTAACCACCTGGCAGAACGCCGAGCCGTGTCGAGGTTCCCTCAAAAAGGTCGAATTCAGTCATTGCTTCGATTAAGATTGTTGCAGCGGAATGCAGCTGCTGAGAATGATAAATCTCAACAGAAATCAACATTATCTAGACAGAACAAACAGACACAAGAATCTGCTGTTGTTATGGAACGAAGGGGGAAATTTAGCACCGCAGTTGAACACAGAAATGCGGAACAGGCAGAAGTAGCTCATCCAACAACGTCACGGGTACAGACAGTTACAAATCCTGTAGTGTCGGATAAGTCTGCTGCGGCTACTCAACCTGGCAAAGACACTTGCAACCAGACTGTTGTTCATGAGACTGCTAATAGCTCTGGAGAATCCACACAAGTATCAATCCCTGAGACTAATGCAGATCACAATAAAGAGAAAGAACATGCAAGTTCACATGTGACACTGCTAGAAACATGTGCAGAGGTTCAAAATAATGATTCGCATGATACTGCCAAGGCACCAACATCGATGATGGCTGATGATTCGGGCCATAATGAGATTGCAAACGGGGCAGAGTCAAGCGAACAACAGCATGCTGTAGAAGGGAAAGATGCAACAGATCAACACAATGATGAAAGCAATTATGATGATATGTTAGAAGAGGTAGAGGTCATGGATCACGTATTCTCCTTGAAAGTCTCGACTTTCCTTTCCAGCAGCTTCCGGGCAGTGATAGATAGATTGATGAACTCCCATAAGGGAACACAGACACAACTAATCAATTGTCAAGATGACGAGGACGAAAACCAAATTCTGATGGCGTATCTACAAGAACGCATGCGTTCTGCAAAATCTCCTCAAGAAGACAAACAAGAGGGAGGAGGGGAGGAGGAAAAGCGAGACGAGATGCAAAATGCTGGACAAGAAGAGGAGGAGCAGAGGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCGGGAGCGGTGTCATGAAGATGTTGAGTATTTTCAACAATCCTCATCACCATGCCCTTCAAGAACATGGAGTTATAAAGACAATGAAACCTGTGATGATTCTGATGGAGTAGTATTTGCATGTGCATCTGCATCTACATATTCTCCTTCACATTCACAACCCTCTCAGTTTCGATCTGCATATCAGGATAATAGGCGAAGTTCTTCACCGCCTAATCATCATTCAATGGAAATGGAACTCATCTATGATTTGAGAAGACAAATGGAGCAACTTCATCATGAGATGTCTGAGCTAAGGAAATCGATTAAGAGCTGCGTGGATATGCAGATTCAGATGCAATTACAACAACAATCCATGGTTCAAACAGTTAACAAAGAAGAAAACATGACGCAGAAGAAGGTACCAAAAAAAGGCAATTGCTGTTTATGCCATGATAATAAAGCTGACTCAATTTTATACAGGTGTGGGCACATGTGTGCGTGTCTAAAGTGTGCCAATGAGCTGCAATGGAATGGTGGAAAGTGTCCAATTTGTCGAGCCAAAATATTAGATGTTGTTCGAGTATACATTGATGCTTAG 2544 0.4556 MASSQVEIASSSPFGLVLRDRNHRGDGCRESNVVNKATHAALQRNIKNFVMDHLNMSMSMSNSDSTRNLNENNSAHWNEIHHNQDRRHHRRHRNVSNLHVSNAMEFKDGSSLNSLISPRQTRLLDRWAAKQAREIVSNLESEAGLLSIDNNKKELGSTGSCNSDGDDNKCVDISNLAASSLVQIWEKRLSGSKPETTASNGAKTSPTAVTSTNNCDSEAGESSSCAVANEDWETHSDQSFSPQSRWSSCETATTEAERPVSVADIIKRLTTPSVHGDDNESEGFISSVASSPCRDLAPENSERRAFPLMIGAPGRIRGRRIFTDMLMQLERDRRGELNHLAERRAVSRFPQKGRIQSLLRLRLLQRNAAAENDKSQQKSTLSRQNKQTQESAVVMERRGKFSTAVEHRNAEQAEVAHPTTSRVQTVTNPVVSDKSAAATQPGKDTCNQTVVHETANSSGESTQVSIPETNADHNKEKEHASSHVTLLETCAEVQNNDSHDTAKAPTSMMADDSGHNEIANGAESSEQQHAVEGKDATDQHNDESNYDDMLEEVEVMDHVFSLKVSTFLSSSFRAVIDRLMNSHKGTQTQLINCQDDEDENQILMAYLQERMRSAKSPQEDKQEGGGEEEKRDEMQNAGQEEEEQRQEQEQEQEQERERCHEDVEYFQQSSSPCPSRTWSYKDNETCDDSDGVVFACASASTYSPSHSQPSQFRSAYQDNRRSSSPPNHHSMEMELIYDLRRQMEQLHHEMSELRKSIKSCVDMQIQMQLQQQSMVQTVNKEENMTQKKVPKKGNCCLCHDNKADSILYRCGHMCACLKCANELQWNGGKCPICRAKILDVVRVYIDA 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01225 847 MobiDBLite consensus disorder prediction 369 392 - -
Aip04g01225 847 SUPERFAMILY RING/U-box 794 839 - -
Aip04g01225 847 MobiDBLite consensus disorder prediction 700 729 - -
Aip04g01225 847 Coils Coil 367 387 - -
Aip04g01225 847 Pfam Zinc finger, C3HC4 type (RING finger) 792 839 - -
Aip04g01225 847 PANTHER BNAC05G24000D PROTEIN 1 846 - -
Aip04g01225 847 MobiDBLite consensus disorder prediction 528 543 - -
Aip04g01225 847 Coils Coil 627 658 - -
Aip04g01225 847 MobiDBLite consensus disorder prediction 369 395 - -
Aip04g01225 847 MobiDBLite consensus disorder prediction 408 448 - -
Aip04g01225 847 PANTHER BNAC05G24000D PROTEIN 1 846 - -
Aip04g01225 847 MobiDBLite consensus disorder prediction 414 448 - -
Aip04g01225 847 Coils Coil 736 756 - -
Aip04g01225 847 MobiDBLite consensus disorder prediction 613 664 - -
Aip04g01225 847 MobiDBLite consensus disorder prediction 191 254 - -
Aip04g01225 847 CDD mRING-HC-C3HC5_NEU1 794 834 - -
Aip04g01225 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 777 846 IPR013083 -
Aip04g01225 847 MobiDBLite consensus disorder prediction 610 678 - -
Aip04g01225 847 ProSiteProfiles Zinc finger RING-type profile. 795 834 IPR001841 -
Aip04g01225 847 MobiDBLite consensus disorder prediction 495 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01225 Aip-Chr4 19972984 19976836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01225 795 843 C3H Transcription Factor Family AT3G06140 36.735 5.01e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01225 - - ahf:112741787 1557.35