Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01220 ATGCAAAAGTTGTTCTTCCTTGTGGAGCGCTGCTTTCAATTACGTGAACCTGTATTGCTTGTTGGTGAAACGGGTGGAGGGAAGACTATTGTATGCCAGTTACTAAGTGCCTATTTGCAATTGAAGTTACATATTTTGAACTATCATAAGCATACAGAAACATCTTACTTCATTGTGGGATTCCGTCCTCTAAGAGAGAGATCTAGACTGATTTCTAACTATAAAGAGATTGTTGAACAACTGAAGAAGCTAGAGGGATTTAGATACTTTCTTGAAGAGCCCTTAGTTTCTTCTGACATAGAGCAAGCTACCTCAACCCTTGATATGCTTAATGGCTATAAAGAAGCCAGAAAGGACGCTAaattttgtgaaaataaaagATACCTCTCTAAACCTTTACTAAATGAGCTTGAAGGCATTGCGCTGAAAAGAATTTCCAAGCTTAAAAATGCGGGAAACGTAAAGGAAGATTATCGTGAAAGGCTCCTGGAAGTTGATAATGCTATGATAACTTCTCCTTCCTTCACTGCCAAGTTGAACAATGTTGATGTTGCCTCAAGTAACTTGCAGTACGGGACATTCAACACCAACCTTGCTTCTTCAGGTTGTTACGTTGAGACAGGGCAACAGCAGCAGCAGCATCATTTGTTCCAGCAGAAGGGGCATTTTGGGACTCGGTCCGAATCATCCATGGCTGACAATAGTCAACAGACCGATGATAAAACCCATTGCAATAATAGGGCCGGAAATGGAGAACTTGTAGTTGTGGACTCCAATGATCAAACTAAGCTTAAACATGAGGATCAAAAGACTCTTCATAGACTGGCTCAGAATTGTGAGGCTGCTAGAAAGATTCGATTGAGGAAGAAGGCATATGTGCAGCAATTGGAGAATAGTAGAGTTAGGCTTGCACAATTAGAGGTGTATTTGCTGCAACTGGAACTGTGGGGGATCCTACTTGCGCAGTTGTCGGAAATGTTAAAAACCATAGGGGCCAAGGCAGATGTATTTCACATACTTTTCGGAACATGGAAGACACCTGCAGAAAGATGCTTCATGTGGCTAGGTGGATTCCGTTCATCAGAGCTTCTTAAGGCTTATGTGCAGCAATTAGAGTCAAGTAGATTAAAGCTTACACAACTTGAACTCAGATTGGAGGAAAAAATTTCCAATTCAGAGTCAGAAAACCAAGTTCATCGCCAGCAAGCATTGGCTGTATCACCAACTAGAAAAGCTTTGACTACAAGATTAATACCTGAGGCATTACTTCTACTTCAACAACTGACACATAATTTGATAATACTTTTAACTTTATTGTTCCAATTCATAAGAGCAAGTAATAAGTCTCCTAAACAAACCGTCACTTCAAACAAATCTACTGCCGCCTCTCATGATGATCCATTTTTAGTGTTTGAAACCACTTCACGCGCAGCATCTTTAGAATCATTCTTTGACTCTTTGGAATAG 1467 0.4001 MQKLFFLVERCFQLREPVLLVGETGGGKTIVCQLLSAYLQLKLHILNYHKHTETSYFIVGFRPLRERSRLISNYKEIVEQLKKLEGFRYFLEEPLVSSDIEQATSTLDMLNGYKEARKDAKFCENKRYLSKPLLNELEGIALKRISKLKNAGNVKEDYRERLLEVDNAMITSPSFTAKLNNVDVASSNLQYGTFNTNLASSGCYVETGQQQQQHHLFQQKGHFGTRSESSMADNSQQTDDKTHCNNRAGNGELVVVDSNDQTKLKHEDQKTLHRLAQNCEAARKIRLRKKAYVQQLENSRVRLAQLEVYLLQLELWGILLAQLSEMLKTIGAKADVFHILFGTWKTPAERCFMWLGGFRSSELLKAYVQQLESSRLKLTQLELRLEEKISNSESENQVHRQQALAVSPTRKALTTRLIPEALLLLQQLTHNLIILLTLLFQFIRASNKSPKQTVTSNKSTAASHDDPFLVFETTSRAASLESFFDSLE 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01220 488 SUPERFAMILY Leucine zipper domain 270 303 IPR046347 GO:0003700|GO:0006355
Aip04g01220 488 Pfam Seed dormancy control 328 365 IPR025422 GO:0006351|GO:0043565
Aip04g01220 488 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 274 288 IPR004827 GO:0003700|GO:0006355
Aip04g01220 488 Gene3D - 269 326 - -
Aip04g01220 488 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 327 365 - -
Aip04g01220 488 SMART brlzneu 266 329 IPR004827 GO:0003700|GO:0006355
Aip04g01220 488 Coils Coil 364 391 - -
Aip04g01220 488 Gene3D - 1 122 IPR027417 -
Aip04g01220 488 MobiDBLite consensus disorder prediction 220 244 - -
Aip04g01220 488 MobiDBLite consensus disorder prediction 220 249 - -
Aip04g01220 488 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 163 319 - -
Aip04g01220 488 PANTHER TRANSCRIPTION FACTOR TGA9 163 319 - -
Aip04g01220 488 PANTHER TRANSCRIPTION FACTOR TGA9 327 365 - -
Aip04g01220 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 97 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01220 Aip-Chr4 19816623 19824578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01220 231 372 bZIP Transcription Factor Family AT3G12250 40.385 3.82e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01220 K14572 - aip:107639084 266.544