Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01209 ATGCTTACGCGGCATACAAACAGTTTGCCAGACTCAGGGGGCACAAGGCATGAGAAACACTACGATCGTCCAGAAAGAGTGAGGGAGGAGAAGCTGGAGAGTCGCACGGGTTGTTCAGCGAAGCTGAAAATTTACTATGATCTTCAAGATCAGGTTTGGAAAGTCCGGAGAATAGACGACAACCATAACCACCCTCTTGCTACAACTATGTTTCGACATCTTCTTCCGAGTCATCGCAATCTGAGTGACAGTGACAAAGCTCAAGTGGATAGTCTAAAAAAGTTTGGCATTGCGACGTCCAAGATAATGGCGTACATGGCCGGGCAGTCAGGGGGTTACGGGATGCTTTGGTTTACTAAGAGGGATCTGTACAATTACGTTCATAGCCAAAGAATAGCACAAATTAACAATGGAGACGCGGCAGCGGCAATAAGTTATTTGGAAGGCAAGGCCAACGCGGACATGATGACTGTCGCCAGATATACCAAAACAACAGAGAATCAACTTGGTAGCCTATTTTGGGCGGATGGGCAGATGATGGCGGACTACCAGTTGTTCGGTGACGTCCTTGCATTTGATGCAACATACAGGTCCAACAAGTACAAGAAGCCTCTGGTGGTGTTCTCCGGATCAAATCATCACAAGCAGACAGCAATTTTCGGCTTTGCATTGCTAGAGGACGAGGAGGTCCGTACATATAAATGGGTGTCGTTGAATATTCTTGATGTCATGGAAAACAAGAAGCCTTCCGTTGTGGTCACTGACGGGGATAAAGCCATGCGGGCAGCGATCGCCGATGTGCTTCCCTTAGCCAGGCATCGCCTATGCGGGTGGCATTTGGAAAAAATTTGTGTCTTACGGGTCAAGGAGCCTGAATTTCGGAAGGTGTTCAAGAAGGCAGTTTATGCAAACCTCGATGTTACCGAGTTCGAGGAGTACTGGAGCACGGCGGTGGAAAGTTTAGGCCTAATGAACAACAGCTGGGTCAAAAGCACCTACGAATTAAGGCATAGCTGGGCAACGGCATATCTACGGGGCACCTTTTGCGTGGGTTACAGGACAACTTCCAGGTGTGAGGGCATAAATGCATTCATCAAAGGGTTCCTGAAGTCCACAAACAGCCTTCTTGAATTGGTTCAGAGCCTGGATAGGGTGGTAAAGGATTATCGCAACAATGAGGTCACAACTCAATTCTATTCATCGTACTACACGCCCGTACTGACCACAGGTCTTGATAACATCGAGCTGTTTGCTGCAAAAACATACACCAGGGCAGTCTTCAAGGAGGTTAGGAAACAGATAAAGGGGGTTGGGAGTTTACTGTTTCTGGGGAAAGACAGCATTAGCACAACCTCTGTCTACAAGTTCTCTAGCGTGGGGAACCGTCGTAAGGTTCGCAAGGTGCTTTACGATCCAAGCGAACCGAAGATTGAATGTGATTGCATGCTGTGGAACAGTGAAGGGATTCCTTGCTGCCATATATTTTGCGTGATGAAGTATGAGGGTTGGGACGAAATCCCACCTGGTTTGGTAGTCAGGCGTTGGTGTAAGGATGCAAAGGAATGGACAGCATCCAAAACATGTGATCTATCGGGCAACAGCAATTGTTTATTGAGGTACGGCGCGCTGTGCAGTGCAATGAGTGTCGTGGCGAAACTAGCTTCCGACGATGCAGCTGACTTCTTAGTGAGGGATGCACTAACATCTTTGGCCCGGAGGCTTCAGGTGCGTAGGGGCAATACCGTAGACCACGAGGCCAGGGAGAGGCAACAGGACGTGGTAAAGGATCCGCCGGTCGCCCGGACTAAAGGGGCCCCAAAACGCGGTAGGGAGGCTGGTTCCTCGACAAATGCAGAACTTGGGGGAGTAGGCGTTGCTGCACTTCTTGCTGCACCTGGCATCTCTCAACCTGGTTTTCCCGGCGGCACCGACCAATACGTACCAAGACCCCCCGAACCGAATGCAGCAAAGTCTAGTCTACCCCGGATAAGCCCAGGGGTTGCCGGCGGCAACTTCTTCCTCGGGGGGCAGCAGATACACCAGTTCTTTGCAGCTCCCAGCTGTTCAACACTCCACCGGGTAGAGCCTAGTCAAGCAGCTGCGGCGATTTCCTCACCTGAAGAAGCTCCCGCTATGACTGCTACGCACTTTAGTACGCCGGGTTCTGATGCCTTCCAACAGTGGGTTCTAGAGGTAAACATAATGCATTGGGTAACTCTCGGTCCGCCAACAGGTCCGGAGGGAACTTCTAATAGGCTGAGCATGAAGAGTTTGCGGGAGAGTGTGACTCCGCTTCGTTCCAAGGCGCAGGTTTTGATAGGTGTTCGTTGCCCGACGGTGTTCCTTTCACATTTTAATGGTTGA 2364 0.5034 MLTRHTNSLPDSGGTRHEKHYDRPERVREEKLESRTGCSAKLKIYYDLQDQVWKVRRIDDNHNHPLATTMFRHLLPSHRNLSDSDKAQVDSLKKFGIATSKIMAYMAGQSGGYGMLWFTKRDLYNYVHSQRIAQINNGDAAAAISYLEGKANADMMTVARYTKTTENQLGSLFWADGQMMADYQLFGDVLAFDATYRSNKYKKPLVVFSGSNHHKQTAIFGFALLEDEEVRTYKWVSLNILDVMENKKPSVVVTDGDKAMRAAIADVLPLARHRLCGWHLEKICVLRVKEPEFRKVFKKAVYANLDVTEFEEYWSTAVESLGLMNNSWVKSTYELRHSWATAYLRGTFCVGYRTTSRCEGINAFIKGFLKSTNSLLELVQSLDRVVKDYRNNEVTTQFYSSYYTPVLTTGLDNIELFAAKTYTRAVFKEVRKQIKGVGSLLFLGKDSISTTSVYKFSSVGNRRKVRKVLYDPSEPKIECDCMLWNSEGIPCCHIFCVMKYEGWDEIPPGLVVRRWCKDAKEWTASKTCDLSGNSNCLLRYGALCSAMSVVAKLASDDAADFLVRDALTSLARRLQVRRGNTVDHEARERQQDVVKDPPVARTKGAPKRGREAGSSTNAELGGVGVAALLAAPGISQPGFPGGTDQYVPRPPEPNAAKSSLPRISPGVAGGNFFLGGQQIHQFFAAPSCSTLHRVEPSQAAAAISSPEEAPAMTATHFSTPGSDAFQQWVLEVNIMHWVTLGPPTGPEGTSNRLSMKSLRESVTPLRSKAQVLIGVRCPTVFLSHFNG 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01209 787 PANTHER OS02G0262500 PROTEIN 25 542 - -
Aip04g01209 787 MobiDBLite consensus disorder prediction 581 618 - -
Aip04g01209 787 SMART 26again6 477 504 IPR006564 GO:0008270
Aip04g01209 787 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 25 542 IPR031052 GO:0006355
Aip04g01209 787 MobiDBLite consensus disorder prediction 581 608 - -
Aip04g01209 787 ProSiteProfiles Zinc finger SWIM-type profile. 466 502 IPR007527 GO:0008270
Aip04g01209 787 MobiDBLite consensus disorder prediction 1 32 - -
Aip04g01209 787 MobiDBLite consensus disorder prediction 11 32 - -
Aip04g01209 787 Pfam MULE transposase domain 189 282 IPR018289 -
Aip04g01209 787 MobiDBLite consensus disorder prediction 639 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01209 Aip-Chr4 19494894 19497909 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip04g01209 MULE 7.2e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01209 - - aip:107636207 1168.3