Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01197 atgttagcttctcataggaatcggcatccacgtagttatccttatcacaacaattTGTCATTTGTCGTAATAAGTCCTAGAAGAACAGGGTTTAGGGTTTTCTGCAGAATTTTGATCCTAACTGGGATAACACAAAGCAATCCATGGCCATGGCATTCTTTGAGACTATCCTCAACCCTTTCTTCTTCTTCAAGTTCCAGAGGCAATTCTTTCGTTGTCTCATACCTCGTCGGAACTTGTGGGTTCTCACCAGAACGCGCAGTTTACATTTCCAAGCGCTTCAGCTTCGAAACAAGCGATAAACCAGATGCAGTGATCTCGTTCATCAAGAATATTGGTCTCTCCCAAACGACGACGTTGAGAGTCATCCAATCTCTGCCCCAATTACTTGTAGCAAACCCTAAAACTCTTCAGCCAAAAATCGATTTTTTCAAGTCCAAAGGGTTTTCCTCCTCTGACATATGCAGGATCATAGAAGGCTGCCCTTCAATCCTCACCCGAAGCTTGCAGAATGAAATCGCTCCCTCCTTCGATTGCTTCGACGCCATGTTTCAGTCTAGGCACAAGCTCATAAAGGCTGCTACCGGTTATTCTGCTATGCTGTATGATTTTGCAAGGTATACAGAACCTAATATAAAGCTTCTTAGAGAAGAAGGAGTTGCTGAATCACACATTGTTAGGTTAATTGAGTACTACCCCAACCAATTGAAGAATAGCCCTAAGAAGTTTAAGGAGGTATTGCAAGAAGTTAAGGATATGAAGTTTGATCCCTTGACGTTTCAATTTATTGTGGCTATTCATGTGAAGGCAAAAACAGGAAAATCCACATGGGAAAGAAAGGAAGGAATTTATAGAAAGTGGGGTTGGACCGATGCCGATATTATCAGAGCTTTCAGACGCTGTCCGTGGTGCTTCGCCAGCTCCGACAACAAGATTGAAGCAGTCATGGATTTTCTGTCTAAGGGTCTGGTGAGGAAGCTGGGCTTGGCTTCAGTGTTTAGGATTAATGAAAAGACCTTCTTGATCTCATTGTGGTTGCATTTGCTGTGTCATGTAAACAGATCTGATTTGGCTTCTAGAGTTGGACAATTTGAGGTTGGACGACATTGA 1110 0.4072 MLASHRNRHPRSYPYHNNLSFVVISPRRTGFRVFCRILILTGITQSNPWPWHSLRLSSTLSSSSSSRGNSFVVSYLVGTCGFSPERAVYISKRFSFETSDKPDAVISFIKNIGLSQTTTLRVIQSLPQLLVANPKTLQPKIDFFKSKGFSSSDICRIIEGCPSILTRSLQNEIAPSFDCFDAMFQSRHKLIKAATGYSAMLYDFARYTEPNIKLLREEGVAESHIVRLIEYYPNQLKNSPKKFKEVLQEVKDMKFDPLTFQFIVAIHVKAKTGKSTWERKEGIYRKWGWTDADIIRAFRRCPWCFASSDNKIEAVMDFLSKGLVRKLGLASVFRINEKTFLISLWLHLLCHVNRSDLASRVGQFEVGRH 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01197 369 PANTHER CGI-12 PROTEIN-RELATED 54 319 IPR003690 GO:0003690|GO:0006355
Aip04g01197 369 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 54 319 - -
Aip04g01197 369 SMART mt_12 120 150 IPR003690 GO:0003690|GO:0006355
Aip04g01197 369 SMART mt_12 226 256 IPR003690 GO:0003690|GO:0006355
Aip04g01197 369 SMART mt_12 155 198 IPR003690 GO:0003690|GO:0006355
Aip04g01197 369 SMART mt_12 295 326 IPR003690 GO:0003690|GO:0006355
Aip04g01197 369 Gene3D Transcription termination factor 3, mitochondrial 85 201 IPR038538 -
Aip04g01197 369 Gene3D Transcription termination factor 3, mitochondrial 202 345 IPR038538 -
Aip04g01197 369 Pfam mTERF 106 334 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01197 Aip-Chr4 19348573 19350276 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip04g01197 mTERF 2.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01197 K15032 - qsu:111987836 225.328