Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01196 ATGTCTCGACTTCTCATTCTACCCAAACACTTTGCTTCCATCAACAATCCATGGCCATGGCTTTCTTTGAGACTCTTCTCAACCCGTTCTTCTTCTTCAAGACCCAAAGGCAACTCTTTCACTGTCTCATACCTCGTTGGAAATTGCGGGTTCTCACCAGAACGTGCAGTTTCCGTTTCCAAACGCTTTAGCTTCAAAACAAGCGAAAGGCCAGACACAGTGATTGCGTTCTTCAGGAACATTGGTTTATCCCAAACGACACTGTTCAGAGTCCTCCAGTCCATGCCACAGTTACTCGTAGCCAGTCCCGAGAGATCTTTGCAGCCAAAAATCGATTTTTTTAAGTCCAAAGGGTTTTCTACCTCTGATATATGCAAGACCATTGTTAATAACCCTTTGATCCTCATCCGAAGCGTGCAGGTTCAGATAGCTCCCGCGTTTGATTTCTTCGATGACATGTTTCCGTCTAGGGACAAGCTCATCAAAGCTGTTATGCGTAATTCCAGTATTCTCTATGACTTTAAAATATATGTAGAACCTAATATAAAGCTGCTTAGAGAAGCAGGAGTTCCTATTTCACATGTTATTAGGTTAATAGAATACTGCCCTCGCCAATTGAAGGCAAACCCTAAGAGGTTTAAGGAGGTATTGCAGGAAATTAAGGAGATGAAGTTTGATCCCTTCAAGTTTCAATTTGTTGTGGCTATTTATGTGAATGTAACCGTAGGAAAATCCTCATTGGCAAGAAGGAAAGGTATTTATAGAAAGTGGGGTTGGACCGATGGCAATATTTTTGCAGCATTTAGAAACCATCCGTGGTGTCTTGTCATCTCGGATGACAAGATTGAAGCAATGATGGATTATCTGGTGAATGGATTGGGTTATTCAGCTTCTTCTATATCTAGTAATCCCTGGGTGTTGTCCATGAGTTTGAAAAGGCGGATTATTCCGAGGGGTTCTGTTATTCTAGTTTTGCAGTCTAAGGGTCTGGGCAGGAAGCTGGGCTTGGGTACAATATTTAGGTGCAATGAAAAGATCTTCTTGGATAAGTTTATCTTCCGCCATGAGAAAGAAGCTGACGATCTATTGAAGTTGTATCAAGCTAATTTAGGAAAAGAGCAAGTCCATAAGAGAAAAGAATGTAATGATTAA 1152 0.4123 MSRLLILPKHFASINNPWPWLSLRLFSTRSSSSRPKGNSFTVSYLVGNCGFSPERAVSVSKRFSFKTSERPDTVIAFFRNIGLSQTTLFRVLQSMPQLLVASPERSLQPKIDFFKSKGFSTSDICKTIVNNPLILIRSVQVQIAPAFDFFDDMFPSRDKLIKAVMRNSSILYDFKIYVEPNIKLLREAGVPISHVIRLIEYCPRQLKANPKRFKEVLQEIKEMKFDPFKFQFVVAIYVNVTVGKSSLARRKGIYRKWGWTDGNIFAAFRNHPWCLVISDDKIEAMMDYLVNGLGYSASSISSNPWVLSMSLKRRIIPRGSVILVLQSKGLGRKLGLGTIFRCNEKIFLDKFIFRHEKEADDLLKLYQANLGKEQVHKRKECND 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01196 383 PANTHER CGI-12 PROTEIN-RELATED 32 371 IPR003690 GO:0003690|GO:0006355
Aip04g01196 383 Pfam mTERF 76 226 IPR003690 GO:0003690|GO:0006355
Aip04g01196 383 Pfam mTERF 245 347 IPR003690 GO:0003690|GO:0006355
Aip04g01196 383 Gene3D Transcription termination factor 3, mitochondrial 48 172 IPR038538 -
Aip04g01196 383 Gene3D Transcription termination factor 3, mitochondrial 173 365 IPR038538 -
Aip04g01196 383 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 32 371 - -
Aip04g01196 383 SMART mt_12 196 226 IPR003690 GO:0003690|GO:0006355
Aip04g01196 383 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Aip04g01196 383 SMART mt_12 161 191 IPR003690 GO:0003690|GO:0006355
Aip04g01196 383 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Aip04g01196 383 SMART mt_12 125 155 IPR003690 GO:0003690|GO:0006355
Aip04g01196 383 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01196 Aip-Chr4 19320815 19322233 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip04g01196 mTERF 7.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01196 K15032 - qsu:111987836 291.197