Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01188 atggtaccgactcctccacctcctccccctcccctGGGGCGTGGAGCGTGGCATTCATCCGGTTCCGATGGGCAGCAGTATCGACCAGCTTGGGATACATCACCACCAGGTTGGTATGAGAGAGGTCCATCCGGGATCCAGCAGGAAGAGGAGGTCCTCCTTGACGAGATCCTCAttgacgacgccttccagcttcacaccgtcgcgcccatcaccatggatcgGGGTCTTCTCTATCTTCATCAAGATTCAAGACATAGAATAGTTCATAGAGATCTTAAGGCTGGAAATATTTTGTTAGATGACGAATTGAATCCTAGAATTTCAGACTTTGGACTAGCAAGAAGCTTTGTAGGAAATGAAAACCAAGCAAATACAAGGCACATTGTTGGAACTTACGGCTATCTGTCACCGGAGTACATAGTTGATGGGATATACTCAACAAAATCTGATGTCTACAGCTTCGGAGTACTGGTGTTAGAGATAGTTAGCGGGAAGAGAAACAGAGGATTCATCCATATTGATCACAATTTTAATCTGCTTGGGCATGCATGGACACTTTTCTCAGAAGGCAAGTGCTTACAAATAGTCGATCCATCTATCAAAGACTCTATTGATTTGCCAGAAGTCCTAAGATCAATTCATGTTGGTCTGCTATGCGTGCAACTAAATTCCGAGGATCGACCAAGCATGTCGTGTGTGCTTACGATGCTGAGTAGTGAATGGGCATTGCCTCAGCCAAAGAAGCCAGGGTTCTTTATTGAGAGAGATGTGGTTGGTAACCGTTCTTCGTCAAGCAACAATAAACTACTGTCTGTTAATAATCTAACAGCTACTCAGGTCTGTCCCCGATAG 855 0.3977 MVPTPPPPPPPLGRGAWHSSGSDGQQYRPAWDTSPPGWYERGPSGIQQEEEVLLDEILIDDAFQLHTVAPITMDRGLLYLHQDSRHRIVHRDLKAGNILLDDELNPRISDFGLARSFVGNENQANTRHIVGTYGYLSPEYIVDGIYSTKSDVYSFGVLVLEIVSGKRNRGFIHIDHNFNLLGHAWTLFSEGKCLQIVDPSIKDSIDLPEVLRSIHVGLLCVQLNSEDRPSMSCVLTMLSSEWALPQPKKPGFFIERDVVGNRSSSSNNKLLSVNNLTATQVCPR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01188 284 ProSiteProfiles Protein kinase domain profile. 1 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01188 284 Pfam Domain of unknown function (DUF3403) 239 284 IPR021820 GO:0004674
Aip04g01188 284 Pfam Protein kinase domain 75 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01188 284 SMART serkin_6 11 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01188 284 MobiDBLite consensus disorder prediction 1 43 - -
Aip04g01188 284 PANTHER GLYCOPROTEIN S6, PUTATIVE-RELATED 73 258 - -
Aip04g01188 284 ProSitePatterns Serine/Threonine protein kinases active-site signature. 88 100 IPR008271 GO:0004672|GO:0006468
Aip04g01188 284 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 73 258 - -
Aip04g01188 284 Gene3D Transferase(Phosphotransferase) domain 1 69 246 - -
Aip04g01188 284 SUPERFAMILY Protein kinase-like (PK-like) 74 238 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01188 Aip-Chr4 19118556 19123657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01188 73 284 Receptor kinase-like Gene Family AT3G45860 52.727 4.93e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip04g01188 Pkinase 3.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01188 - - adu:107462379 414.461