Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01173 ATGGTTGATAACATTGGAGGTAGTGGTTCTTCTAATAATGAAGGCATCATCAAGGAGCAAGATCGGTTGCTGCCAATAGCCAATGTTGGTAGGATCATGAAGCAGATTCTTCCTCAGAATGCGAAAATCTCGAAGGAGGCGAAGGAGACGATGCAGGAGTGCGTGTCGGAGTACATTAGCTTCGTGACGAGCGAGGCGTCGGAGAAATGCCGGAAGGAGAGGAGGAAGACTGTTAATGGTGATGACATTTGTTGGGCGCTCGCAACGCTCGGTTTTGATGACTATGCCGAAGGGATGAGAAGGTATTTACATAGGTATAGAGAGTTAGAGGTTGATAATAATAATAATAATAATAATAATAATAATAATCAAGAGAGAGGGAAATAA 387 0.4289 MVDNIGGSGSSNNEGIIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEYISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEGMRRYLHRYRELEVDNNNNNNNNNNNQERGK 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01173 128 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 125 - -
Aip04g01173 128 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 125 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aip04g01173 128 SUPERFAMILY Histone-fold 20 122 IPR009072 GO:0046982
Aip04g01173 128 Coils Coil 106 126 - -
Aip04g01173 128 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aip04g01173 128 Gene3D Histone, subunit A 12 128 IPR009072 GO:0046982
Aip04g01173 128 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Aip04g01173 128 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Aip04g01173 128 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Aip04g01173 128 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01173 Aip-Chr4 18598378 18598764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01173 16 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.471 6.74e-58 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aip04g01173 CBFD_NFYB_HMF 2.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01173 K08065 - gmx:100794513 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01173 04 18598378 18598764 Aip04g01173 04 18598378 18598764 ECH