Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01168 ATGTTCTGCACTTCACAATCACACTCTTTGACGGTTTCATACCTCATCAATAACCTTGGCTTCACCCCACAATCCGCTCTAAACACCTCAAAACGGTATAGTTTCAAGACCCCACACAAGGCAGACTTAGTCATCGCATTCTTCAAGACCCATGGATTCTCCCATTCCCATATCGCTGCCATTGTTGCCAAGCTACCTAAGATACTTTCGTCCAATCCACAAATGATCATGCCAAAGTTTCAATTTCTGGCCTCCAAAGGTGCTTCCACCGATGACATTATTCTGCTAGCCACTAGGAACCCTAAATTCTTGCAATCGAGCCTCAAGAACAACATAATCCCTACTTATGGAATGCTGAGAACATACTTTCAATCCGATGAGAAAATGCTCCGTTGCATTGCTTCTTTCCCTGTTTCGTTTATGGAGGCTCGTTTGGTGAACAGTGTCAAGATGTTGGCTGATGCAGGAGTCTCTGACTCTGCTATCGGCTATTTGTTGCGTACCAGGGTTTCGGTGCTCTTGTCTGCTAACTTTAGGGAGCAGGTGGACGAAATAAAGGAATTAGGGATTGATCCTTCAACTGTTAAGTTCGCCATAGCTTTGCGTGCCAAAAAGACTGTACCGAAATCACTGTGGGATGCGAAAGTCGATGTCTTGAAGAGCTGGGGTTGGTCTAAAGAAACAATGTCCGAAGCATTCAGGAGGAACCCTTTATGTATGCTATCATCTAAGGATAAGATTAATGAGGTGATGAAACTTTGGGTCAATCAATTAGGTTGGGACCCTTTGGCTCTTGCCAAGTTTCCATGGCTTTTTGGATATAGTTTGGAGAGAAAGCTTATTCCAAGGGCTTTTGTTCTCCAGTATTTACTTTCAAGAGGTCTGAGAAACAAGAATGATGAATTAAGTAACCCATTTTTTATTTCTGAAGAGTTGTTCGTTAAAAGGTTTGTGGAATGTTTTCCCGAGGAAAGGACAGATAGGCTGACACACAATTTTGGTGCATCGCCTGAAATACAAGTAGCTTCTGGACACAGCATAAGCATGGTAGTTCAGGTAGCAGCCTCGCAAGGGTGCTACTTGCCTACTTACTACTTGCTTGAGATGGATAACTGTGTATGA 1122 0.4323 MFCTSQSHSLTVSYLINNLGFTPQSALNTSKRYSFKTPHKADLVIAFFKTHGFSHSHIAAIVAKLPKILSSNPQMIMPKFQFLASKGASTDDIILLATRNPKFLQSSLKNNIIPTYGMLRTYFQSDEKMLRCIASFPVSFMEARLVNSVKMLADAGVSDSAIGYLLRTRVSVLLSANFREQVDEIKELGIDPSTVKFAIALRAKKTVPKSLWDAKVDVLKSWGWSKETMSEAFRRNPLCMLSSKDKINEVMKLWVNQLGWDPLALAKFPWLFGYSLERKLIPRAFVLQYLLSRGLRNKNDELSNPFFISEELFVKRFVECFPEERTDRLTHNFGASPEIQVASGHSISMVVQVAASQGCYLPTYYLLEMDNCV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01168 373 SMART mt_12 94 126 IPR003690 GO:0003690|GO:0006355
Aip04g01168 373 SMART mt_12 230 261 IPR003690 GO:0003690|GO:0006355
Aip04g01168 373 SMART mt_12 262 296 IPR003690 GO:0003690|GO:0006355
Aip04g01168 373 SMART mt_12 59 89 IPR003690 GO:0003690|GO:0006355
Aip04g01168 373 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 5 329 - -
Aip04g01168 373 Pfam mTERF 46 196 IPR003690 GO:0003690|GO:0006355
Aip04g01168 373 Pfam mTERF 214 304 IPR003690 GO:0003690|GO:0006355
Aip04g01168 373 Gene3D Transcription termination factor 3, mitochondrial 8 140 IPR038538 -
Aip04g01168 373 Gene3D Transcription termination factor 3, mitochondrial 141 326 IPR038538 -
Aip04g01168 373 PANTHER CGI-12 PROTEIN-RELATED 5 329 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01168 Aip-Chr4 18385804 18387436 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip04g01168 mTERF 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01168 K15032 - gmx:102666739 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02798 01 129568886 129598573 Aip04g01168 04 18385804 18387436 PCT