Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01167 ATGTTCTGCACTTCACAATCACACTCTTTGACGGTTTCATACCTCATCAATAACCTTGGCTTCACCCCACAATCTGCTCTAAACGCATCAAAACGGCATCGTTTCAAGACCCCACACAAGGCAGACTTAATCATCGCATTCTTCAAGACCCATGGATTCTCCCATTCCCAAATCGCTTCCATTGTTGCTAAGCTACCTAAGATACTTTCAGCCAATCCGGAAAGAATCCTGCCAAAGTTTCAATTTCTGGCCTCCAAAGGTGCTTCCACCGATGACATTGTTCTGCTAGCCACTAGGAACCCTAGATTCTTGCATTCGAGCCTCAAGAACAACATAATCCCTACTTATGGAATGATGAACACCTTCTTTGAATCCGATCAGAAAACGCTCCGTTGCATTGCTTCTTTCCCTGCTTTGTTCATGGAGCCTCGCTTGCCAAAAAATGTCAAGTTGTTGGCTGATGCAGGAGTATCTAACTCCGCAATCCGCCATTTGTATCGTACCAGAGTGTCCGTGCTCTTTTCTTCTGATTTGAGGAAGCCTGTGGATGAAGTAAAGGAATTAGGGTTTGATCCGTCATCGGTTAAATTCGCCATAGCTTTGCTAGCCAAGAAGACTATACGGAAATCACTGTGGGATGCGAAAGTCGATATCTTGAAGAGCTGGGGTTGGTCTAAAGAAACAACGTCCCAAGCATTCAGGAGGAACCCTTTATGTATGCTATCATCTAAGGATAAGATTAATGAGGTGATGAAACTTTGGGTCAATCAATTAGGTTGGGACCCTTTGAGTCTTGCCAAGATTCCATGGCTTTTTGGATATAATTTGGAGAGAAGGATTATTCCAAGGGCTTTTGTTCTCCAGTATTTACTTTCAAGAGGTCTGAGAAACAAGAATGATGATTTAAGTACCCCATTTTATGTTTCTGAAGAGTTGTTCTTTAACAAGTTTGTGGAATGTTTTACCAAGGAAAGGTCTCAACTACGTAAGATATACTATGAGAAAAAAGGATGTTCATGA 1020 0.4206 MFCTSQSHSLTVSYLINNLGFTPQSALNASKRHRFKTPHKADLIIAFFKTHGFSHSQIASIVAKLPKILSANPERILPKFQFLASKGASTDDIVLLATRNPRFLHSSLKNNIIPTYGMMNTFFESDQKTLRCIASFPALFMEPRLPKNVKLLADAGVSNSAIRHLYRTRVSVLFSSDLRKPVDEVKELGFDPSSVKFAIALLAKKTIRKSLWDAKVDILKSWGWSKETTSQAFRRNPLCMLSSKDKINEVMKLWVNQLGWDPLSLAKIPWLFGYNLERRIIPRAFVLQYLLSRGLRNKNDDLSTPFYVSEELFFNKFVECFTKERSQLRKIYYEKKGCS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01167 339 Pfam mTERF 214 310 IPR003690 GO:0003690|GO:0006355
Aip04g01167 339 Pfam mTERF 46 195 IPR003690 GO:0003690|GO:0006355
Aip04g01167 339 Gene3D Transcription termination factor 3, mitochondrial 125 330 IPR038538 -
Aip04g01167 339 SMART mt_12 262 296 IPR003690 GO:0003690|GO:0006355
Aip04g01167 339 SMART mt_12 59 89 IPR003690 GO:0003690|GO:0006355
Aip04g01167 339 SMART mt_12 94 126 IPR003690 GO:0003690|GO:0006355
Aip04g01167 339 SMART mt_12 130 158 IPR003690 GO:0003690|GO:0006355
Aip04g01167 339 SMART mt_12 230 261 IPR003690 GO:0003690|GO:0006355
Aip04g01167 339 SMART mt_12 163 191 IPR003690 GO:0003690|GO:0006355
Aip04g01167 339 PANTHER CGI-12 PROTEIN-RELATED 5 335 IPR003690 GO:0003690|GO:0006355
Aip04g01167 339 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 5 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01167 Aip-Chr4 18355475 18356494 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip04g01167 mTERF 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01167 K15032 - gmx:102666739 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02799 01 129600021 129607148 Aip04g01167 04 18355475 18356494 PCT