Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01166 ATGTTTAACTCCCACCGTTACAAACCCCTTATCTATCTAAACCTAAAAGTCCTATTCCGAAGAACACCACCACACATGTTCTGCACTTCACAATCACACTCTTTGACGGTTTCATACCTCATCGATAACCTTGGCTTCACCCCACAATCCGCTCTAAACACCTCAAAACGGCATAGTTTCAAGACCCCACACAAGGCAGACTTAGTCATCGCATTCTTCAAGACCCATGGATTCTCTCATTCCCAAATCGCTGCCATTGTTGCCAAGCTACCTAGGATACTTTCATCCAATCCACAAACGATCCTGCCAAAGTTTCATTTTCTGGCCTCCAAAGGTGCTTCCACCGATGACATTGTTCTGCTATCCACTAGGAACCCTAGATTCTTGCATTTGAGCCTCAAGAACAACATAATCCCTACTTATGCAATGCTGAAAACCTTCTTTCAATCCGATGAGAAAACGCTCCGTTGCATTGCTTCTATCCCTGGTTTGTTTATGGAGGCTCGCTTGGTGAAAAATGTCAAGTTGTTGGCTGATGCAGGAGTCTCTGACTCCGCTATCGGTTATTTGTTGCGGACCAGAGTTTTAGTGCTCTTGTCTGCTGACTTGAGGAAGCAGGTGGATGAAATAAAGGAATTAGGGATTGATCCTTCAACGGTTAAGTTCGCCATAGCTTTGCAAGCCAAAAAGACTGTACCGAAATCACTGTGGGATGCAAAAGTCAATGTCTTGAAGAGCTGGGGTTGGTCTAAAGAAACAATGTCCGAAGCATTCAGGAGGAACCCTTTATGTATGCTATCATCTAAGGATAAGATTAATGAGGTGATGAAACTTTGGGTCAATCAGTTAGGTTGGGACCCTTTGGCTCTTGCCAAGATTCCATGGCTTTTTGGATATAATTTGGAGAGAAGGATCATTCCGAGGGCTTTTGTTCTCCAGTATTTACTTGCAAAAGGTTTGAGAAACAAGAGTGACAATTTGTGTCTGCCGTTTTTTATTCCGGAAGACATGTTCCTTAAAAGATTTGTGGAAAGTTTTACAGAAGATATGTCTCAACTACTTAAGATATACCATGAGAAAAAAAAGATGTTTATGATAACTGCCTAG 1107 0.4219 MFNSHRYKPLIYLNLKVLFRRTPPHMFCTSQSHSLTVSYLIDNLGFTPQSALNTSKRHSFKTPHKADLVIAFFKTHGFSHSQIAAIVAKLPRILSSNPQTILPKFHFLASKGASTDDIVLLSTRNPRFLHLSLKNNIIPTYAMLKTFFQSDEKTLRCIASIPGLFMEARLVKNVKLLADAGVSDSAIGYLLRTRVLVLLSADLRKQVDEIKELGIDPSTVKFAIALQAKKTVPKSLWDAKVNVLKSWGWSKETMSEAFRRNPLCMLSSKDKINEVMKLWVNQLGWDPLALAKIPWLFGYNLERRIIPRAFVLQYLLAKGLRNKSDNLCLPFFIPEDMFLKRFVESFTEDMSQLLKIYHEKKKMFMITA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01166 368 SMART mt_12 287 321 IPR003690 GO:0003690|GO:0006355
Aip04g01166 368 SMART mt_12 119 151 IPR003690 GO:0003690|GO:0006355
Aip04g01166 368 SMART mt_12 255 286 IPR003690 GO:0003690|GO:0006355
Aip04g01166 368 SMART mt_12 84 114 IPR003690 GO:0003690|GO:0006355
Aip04g01166 368 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 26 362 - -
Aip04g01166 368 Pfam mTERF 239 321 IPR003690 GO:0003690|GO:0006355
Aip04g01166 368 Pfam mTERF 71 220 IPR003690 GO:0003690|GO:0006355
Aip04g01166 368 Gene3D Transcription termination factor 3, mitochondrial 166 356 IPR038538 -
Aip04g01166 368 PANTHER CGI-12 PROTEIN-RELATED 26 362 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01166 Aip-Chr4 18294490 18296461 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip04g01166 mTERF 9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01166 K15032 - gmx:102666739 361.688