Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01125 ATGTCATCGACGCCTACATCATGCGCGGCATGCAAGTTCCTTCGTCGGAAGTGCACACCGGAGTGCATTTTCGCACCGTACTTCCCAGCGAACGACCCAGAGCGCTTCGAATGCGTCCACCGCGTCTTCGGCGCCAGCAACGTCGGCAAGATCCTCAACGAGCTACATCCATCCCAGCGCGAGGATGCGGTGAAGTCCCTTGCGTTCCAGGCGAAGGCACGCCTCCGCAACCCGGTCTATGGCTGCACCTTCCAAGTCTCCATCCTCCAGCAGCTCCTCCGCCAGAGACGTGCCGTCCTCGAAAACGCCAAGAGAGAACTTAGTGCCTACATCAACCCGCCAGCCATTCAAGTATTCAGCCCATTTAGACCCATCCTACGATCCAAATGTTGTACACTCTTCAGCCCATTTGGGCCTATCGAACGGTCTTCAGCCCATTTGGGCCTATCGAACGGCCCAGATGATGAACCTTTTTTTAAGTCAGCTATGCAGCATAATAGGTCATTGGGTGGTGGTGGTGCTGTCCCGCAGCCGGACCCATGGCTGCAAGAGTTGTTGGAGGCCCAACAACTTGCTGCTGCTGTGGCATTCCGAGAACAGCAACAGGAGTATCTAAGACACAATGCTGCTGCTGGGATTGAACCTGTTGCGACTGCGGCACCCTACGGCGGTAATGTCAGTGGAAGTGGAGTGTTTGGCCACATGGGTGCACCTTCAGGCGGTCAAGGAGGTGAGATGGCACCTTGTATGGGTTTGGGGACATTTGATAGTGGTGGAAGTTATCATCCACAATTGCAACAACCACCACAGCATGGAGTAGGGGGAAATTACATCCTTGCAACTCAACATCACTACCCTCTTGAGGGCCAGTTGCTGCTCCCATCAGAGCACCAAGCACTACCTTTAACCCTACAACAACAACAGCAACTAGAACTACAAGTATTACAACAACAACAGCAACTACAAGTATTGCAACAACAACAACTAGAACTACAACTATTACAACTAACAACAACTAGAACTACAAGTATTACAACAACAGGAGCAGCAGCAACTACAACAACTGTCAGAGAGTGA 1077 0.5181 MSSTPTSCAACKFLRRKCTPECIFAPYFPANDPERFECVHRVFGASNVGKILNELHPSQREDAVKSLAFQAKARLRNPVYGCTFQVSILQQLLRQRRAVLENAKRELSAYINPPAIQVFSPFRPILRSKCCTLFSPFGPIERSSAHLGLSNGPDDEPFFKSAMQHNRSLGGGGAVPQPDPWLQELLEAQQLAAAVAFREQQQEYLRHNAAAGIEPVATAAPYGGNVSGSGVFGHMGAPSGGQGGEMAPCMGLGTFDSGGSYHPQLQQPPQHGVGGNYILATQHHYPLEGQLLLPSEHQALPLTLQQQQQLELQVLQQQQQLQVLQQQQLELQLLQLTTTRTTSITTTGAAATTTTVRE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01125 358 Coils Coil 86 106 - -
Aip04g01125 358 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Aip04g01125 358 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 4 209 - -
Aip04g01125 358 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Aip04g01125 358 Coils Coil 307 327 - -
Aip04g01125 358 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01125 Aip-Chr4 17130670 17131826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01125 1 116 AS2 family AT5G66870 62.069 1.90e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip04g01125 LOB 1.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01125 - - ahf:112710769 432.95