Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01120 ATGACGATAAACAACAGCACTCCAAATCCAATAACACTAACTGAGGCGAATTCAAGAGGCTACAATCTCAGCGGCAAGATCATGCTAACCGCCATTATCCTCCTCTTCTTTCTCGTTCTCCTCATGCTCTCTCTCCACCTTTACGCTCGCTGGTACCTTANNNGCACCAACATCGTCTTTTACATCGACCCTCCCACTCTCTCCGCTTCCCATGGCCTTGACCCCGCCCTCCTTGAATCCATTCCCATCTTCACCTACCACCCGCCAAATCCGCCGGAATGCGCCGTCTGCTTATCGGAGTTCGAACCGGGAGAAACTGGTCGGATCTTGCCAAAATGCAACCACGTGTTTCACACCGATTGCATAGACATGTGGTTCCATTCTCATACCACGTGTCCGCTGTGCAGAGCTCCTGTGGAGCCGCAACCTGAAGTGGAAACCCGACCCGAAGAAGTTGTTATAACGGTTTGCGAAAGCGAAACCGGTTCGAGTTCCGGGATCTGTCCGCAAGAAGTCAACCGGAGTGGAACTGGAACCGGAAGGGAGAGGAGGAAGCTTTCTCCGGTGACGGTGGAGCTTCCGGCGAGGACTAGCGAGGGTTTTAGTGACGAGTCAGGTGGTCACGAGTCGCCGCAGCTGTCGTCGTCGTCGTCGTTTCGTTCTCCGATGAGTCGAATGCTTTCGTTCAAAAGAATCCTCAGCAGGGAACGGAAAGGGAGCGTGTCTCCAGGCGGCGGTGGAAGTTGTAGCACCGCGGCTGAGGTGGGGGACGCAGAGCGAGGTGGTGAAAAAGAGGAGACTCTGAGATAG 810 0.542 MTINNSTPNPITLTEANSRGYNLSGKIMLTAIILLFFLVLLMLSLHLYARWYLXXTNIVFYIDPPTLSASHGLDPALLESIPIFTYHPPNPPECAVCLSEFEPGETGRILPKCNHVFHTDCIDMWFHSHTTCPLCRAPVEPQPEVETRPEEVVITVCESETGSSSGICPQEVNRSGTGTGRERRKLSPVTVELPARTSEGFSDESGGHESPQLSSSSSFRSPMSRMLSFKRILSRERKGSVSPGGGGSCSTAAEVGDAERGGEKEETLR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01120 269 CDD RING-H2_EL5_like 93 136 - -
Aip04g01120 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 145 IPR013083 -
Aip04g01120 269 MobiDBLite consensus disorder prediction 165 269 - -
Aip04g01120 269 MobiDBLite consensus disorder prediction 204 224 - -
Aip04g01120 269 PANTHER RING-H2 FINGER PROTEIN ATL64 16 160 - -
Aip04g01120 269 SUPERFAMILY RING/U-box 93 144 - -
Aip04g01120 269 SMART ring_2 94 135 IPR001841 -
Aip04g01120 269 Pfam Ring finger domain 93 136 IPR001841 -
Aip04g01120 269 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Aip04g01120 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 16 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01120 Aip-Chr4 17009608 17010879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01120 1 264 Rapid Response to Elicitors AT3G16720 44.918 1.77e-76 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01120 - - gsj:114368044 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01120 04 17009608 17010879 Aip04g01120 04 17009608 17010879 ECH
Aip01g02843 01 130290446 130295830 Aip04g01120 04 17009608 17010879 PCT