Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01117 ATGGCGGAAGGTAGTAACGGAGACCAGAAGAAGAAACTGGCCATTATTAGCATCTCCATGATCCTTCTTGTGGCCATGATCGCGTCGGTGGCGATCGGCATAACCAGCCACCGAGAAAAAGGATCAAAGGGCAGAGAAGACGACGAGGAGGAGCCCCACGTTGCAAAATCTCAGAAGAATGTAGAGGTGATTTGCCAATCCACGGAATACAAAGAAACATGTGAAAAGAGTCTTGCAGATGCATCAACCAAAACCTCAGACATGAAAGAACTCATAAAAGCAGCATTTAACTACACAACGGTTGAGTTAGCGAGTCACATTGAAAACTCAACTTTATATCAAGAATTGGGAAAGGACAACATGACAAAACAAGCCTTGGACATATGCAAAGAAGTGTTGGGCTATGCGGTTGACGACATGCAAAAATCAATTGATAAAATGGACAAATTTGAATTAAGCAGAATCAATGAATATGCATATGATATCAAGGTTTGGGTGGCAGGCACCATTACCCACCAGCAAACATGCTTAGCCGGCTTCGATAACACGACGACAAAAGCCGGCGAAACCATGGCCAATGTGCTCAAAACCTCCCTAGAACTTAGTAGCAATGCCTTGGACATGATCAACGGAATATCCAAGGTACTCAAGCAATTCGACTTCAGCTCGCTAACCGCCGCTAGTAGTACTAACCATAGGAGGCTTCTTGATGAAGAAACCTCCCATTCTAAGGATGGGATTCCTTCATGGGTGGGTGAAAGCCAAAGAAAGCTTATTAAGGCGGGTCCGACCGGCGGCATTGGTGGCATTGTTGGACAGCCTAATGCAGTTGTGGCTCAAGACGGCAGTGGACAGTTTACAACACTCACCGATGCTCTTAAAACCGTGCCAAAGAAGAACTCAAGTCCCTTCATAATTTACGTTAAGGCTGGCGTGTACAAAGAGTATGTCAATGTTGTCAAGAATATGGATCATGTCATAGTTGTTGGAGATGGCCCTGACAAAACTATATTCACCGGTAGCAAGAATTATGTGGATGGTGTCCAAACTTATAACACCGCAACCTTCGGTGTGAATGCTGCCAACTTCATGGCGAAGAATATCAGATTCGAGAACACAGCAGGGGCAGAAAAGCACCAAGCTGTGGCACTCAGAGTAACAGCAGACCAAGCCGTGTTCTACAACTGCCACATGGACGGTTTCCAAGACACGCTTTACGTCCAATCCCAACGCCAATTCTACCGTGACTGCACCATAACAGGCACCGTAGACTTCGTATTCGGCGATGCAGTTGGAGTCTTCCAAAACTGCAAGCTACTAGTCCGAAAGCCGTTATCCAACCAACAATGCATGGTCACAGCAGGTGGCAGAACCAAAGTTGACAGCCCAACTGCATTGGTTTTCCAGAGCTGCTACTTCACCGGAGAGCCTCAACTTGCCACGTTGAAAACCAAGATTTCATTCTTGGGTAGGCCATGGAGGATATACTCCAAGGTGGTGATCATGGACTCCATCATTGATGATATCTTTGTGCCTGAAGGATATATGCCATGGATGGGAAGCGCGTTCAAGGACACGTGTACGTATTATGAGTATAACAACAAGGGTCCTGGTGCTGACACGTCGAAGAGGATTAACTGGCCTGGGTTTAAGGTCTTGAATTCTCTTGAAGCCATGAGTTACTATCCTGGAAGATTCTATGAGCTTGCTAATTCAACTGATCGTGATGGTTGGATCATTAACTCTGGTGTTCCGTACAGTCTTGGTCCCTTGCTTGCCACCACTAACGCCGGCACCACCGCTACACCTGTCCCCACTATCGTAACTGCCATGCCCGCAGCCACACGCGTTATTTCTGCAGCCAAAACCACAGCCTCAGCACCCGCCGCTGCCACCACTGCATAA 1905 0.4703 MAEGSNGDQKKKLAIISISMILLVAMIASVAIGITSHREKGSKGREDDEEEPHVAKSQKNVEVICQSTEYKETCEKSLADASTKTSDMKELIKAAFNYTTVELASHIENSTLYQELGKDNMTKQALDICKEVLGYAVDDMQKSIDKMDKFELSRINEYAYDIKVWVAGTITHQQTCLAGFDNTTTKAGETMANVLKTSLELSSNALDMINGISKVLKQFDFSSLTAASSTNHRRLLDEETSHSKDGIPSWVGESQRKLIKAGPTGGIGGIVGQPNAVVAQDGSGQFTTLTDALKTVPKKNSSPFIIYVKAGVYKEYVNVVKNMDHVIVVGDGPDKTIFTGSKNYVDGVQTYNTATFGVNAANFMAKNIRFENTAGAEKHQAVALRVTADQAVFYNCHMDGFQDTLYVQSQRQFYRDCTITGTVDFVFGDAVGVFQNCKLLVRKPLSNQQCMVTAGGRTKVDSPTALVFQSCYFTGEPQLATLKTKISFLGRPWRIYSKVVIMDSIIDDIFVPEGYMPWMGSAFKDTCTYYEYNNKGPGADTSKRINWPGFKVLNSLEAMSYYPGRFYELANSTDRDGWIINSGVPYSLGPLLATTNAGTTATPVPTIVTAMPAATRVISAAKTTASAPAAATTA 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01117 634 ProSitePatterns Pectinesterase signature 2. 419 428 IPR033131 -
Aip04g01117 634 Pfam Plant invertase/pectin methylesterase inhibitor 61 208 IPR006501 GO:0004857
Aip04g01117 634 ProSitePatterns Pectinesterase signature 1. 300 319 IPR018040 -
Aip04g01117 634 PANTHER PECTINESTERASE 6 594 - -
Aip04g01117 634 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 214 IPR035513 -
Aip04g01117 634 MobiDBLite consensus disorder prediction 37 57 - -
Aip04g01117 634 Gene3D - 273 591 IPR012334 -
Aip04g01117 634 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 211 IPR006501 GO:0004857
Aip04g01117 634 CDD PMEI-like_3 64 214 - -
Aip04g01117 634 Pfam Pectinesterase 275 566 IPR000070 GO:0030599|GO:0042545
Aip04g01117 634 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 212 IPR035513 -
Aip04g01117 634 SMART PMEI_2 56 208 IPR006501 GO:0004857
Aip04g01117 634 PANTHER PECTINESTERASE 6 594 - -
Aip04g01117 634 MobiDBLite consensus disorder prediction 38 57 - -
Aip04g01117 634 SUPERFAMILY Pectin lyase-like 273 568 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01117 Aip-Chr4 16972299 16974663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01117 9 634 Carbohydrate Esterase AT3G05610 42.994 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01117 K01051 - gmx:100800194 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01117 04 16972299 16974663 Aip04g01117 04 16972299 16974663 ECH
Aip01g02844 01 130302595 130305119 Aip04g01117 04 16972299 16974663 PCT