Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01109 ATGCTATTGATTGTGACGGATGTTGCAGCTCTTGGCATTGATATTCCGTTGCTTGATAATGTTATCAATTGGGACTTCCCTCCAAAGCCTAAGATATTCGTTCATCGTGTTGGAAGGGCTGCAAAGGCTGGCCGTACTAGCATTGCTTATTCCTTCGTGACATCGGAAGATATGGCTTACCTATTGGATCTTCATTTGTTTCTGTCGAAGCCAATAAAAGCTGCTCCCACCGAAGAAGAGGTCTTGCAGAATATGACTGGAGTAATGTCGAAAATTGAACAGGCAATGGTAAATGGAGAAACTGTTTATGGCCGATTCCCTCAAACAGTCCTTGACCTTGTTTCAGATAGAGTTAGGGAAATTATTGATACTAATGCAGAATTGGAGTCATTGCAGAGAACATGTATCAATGCATTCCGTTTATATATGAAGACAAAACGCTTACCATCTAAGGAGTCTATTCGAAGAGTAAAGGATTTGCCACGTGAGAATCTGCATCCGATGTTCAAGAATGTATTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATGTACAGGGTCGTTTCCGTCAATGGGTTGATATGATGAAAAGGAAGAGAGCCATTCATGAAAATATTCTAAATTTGGTTCATGAACAGATGATATCGTAA 651 0.4055 MLLIVTDVAALGIDIPLLDNVINWDFPPKPKIFVHRVGRAAKAGRTSIAYSFVTSEDMAYLLDLHLFLSKPIKAAPTEEEVLQNMTGVMSKIEQAMVNGETVYGRFPQTVLDLVSDRVREIIDTNAELESLQRTCINAFRLYMKTKRLPSKESIRRVKDLPRENLHPMFKNVLEAEGEAAKSKHVQGRFRQWVDMMKRKRAIHENILNLVHEQMIS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01109 216 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 1 173 - -
Aip04g01109 216 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 171 214 - -
Aip04g01109 216 Pfam Helicase conserved C-terminal domain 2 44 IPR001650 -
Aip04g01109 216 Gene3D - 1 214 IPR027417 -
Aip04g01109 216 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 83 IPR001650 -
Aip04g01109 216 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 173 - -
Aip04g01109 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 86 IPR027417 -
Aip04g01109 216 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 171 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01109 Aip-Chr4 16862770 16863663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01109 2 77 Eukaryotic Initiation Factors Gene Family AT1G72730 38.158 6.81e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01109 K14808 - gmx:100817417 345.125