Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01107 ATGGAAAAGAAAAGAAAAATCATAGTATCAATAGTTGTTTCACTTTCGCTCATCCTTGTGGCGGTAGTTGCCACTGGGGTCATCATGGCCGTTAATAACAAGAAAAGCAATGGCGCTGATGAAGTGCAAAACACTAAAGAAAGGTTCACGAGTCTCATGTGCCGCAACACACAAGAGGATCAAAACCTCTGTCGCGAGGTTCTAAGCCAAGTTGATGGTTCTTCTTCTTCCGACCCGAAAGCATATATCGACGCCGCCGTGAACGATATCAGAGACAGCGTCACCACCGCCCTAAAGATGATAACGACTGAGGAGGAGTTCTCCAAAGATGACAATGGAATCAAGATGGCCATTGATGGTTGCAAAGAAGTCATGGAGTCCGCATTGAGCAGCCTCGATCTTTTCAGCAATGCGCTTCGCAGCAATCACGACATTAACTCCGTGCAAACGCAAAGCCCCGACCTCAAGAACTGGCTTAGCGCCGTTATCTCATATCAGCAATCTTGTGTTGACATTTTTGAAGATCAAAATGAAGGAGAGAGAAAAATCAAAGAACAACTACAAAGCCAGAGTTTGGATCGTGTTGAGAAGGTTTCCATCATAACTCTCGATATTGTTACTGGTTTAGCTAAGATCATTGAAGATCTTGGTGTGCATGTGCAAATGAAACCCATTTCTTCTTCTGGGCGTGTTCTTCGCGAAGAGGTTGATAACGAGGGGTTCCCCGATTGGTTTTCCTCTTCAGATCGCAAGCTGTTGGCGAAGGATGTGAAGTTTTATGTTCCAAATGTAGTGGTTGCTAAAGATGGTAGTGGAAACTTTAGGACGATTCAGGATGCAATTAACTCATACCCAAAGACAAAGAATTTTCAGGGAAGGTACATTATCTATGTTAAGACGGGGATCTATAAGGAGAATTGTACGGTTCCATCTCATGCAATGAACGTTTTCATGTATGGCGATGGCCCTACTAAGACCATTGTCACTGCTAGTATGAGCAATGTCACCCACAACCTCAAGACCATGTTAACTGCCACTTTTGTGAATAAAGCGGGAATGTTTCTTGCGAAGGACATGAGGTTCGAGAATGCAGCTGGTGCAAAAGGGCACCAAGCAGTTGCACTCAGAAATGTAGGAGATTTTTCAGCTTTTTATAACTGCCACATACACGGTTATCAAGACACTTTGTATGTTCAAGCCAACAGACAATTCTACCGCAACTGCGAAATTGCTGGAACAGTTGACTTTATCTTCGGTACATCCCCCGGCTTCTTAGATATTTGTGAGTATGGAAATACCGGACCAGCTGCTTCAGTTCATGGAAGAATCAAGTGGAAGGGATATCGTGGTATAATAACCAAGAATGAAGCAATGCGATTCACTGTTGCTGAATTCCTCAAGGGTGGACCTAACAATAGTGCTGACCAATGGTTGAACGCTCTTGGTGTTCCTTTTGACAGTGGTTTTCTAAGACCATAA 1479 0.4361 MEKKRKIIVSIVVSLSLILVAVVATGVIMAVNNKKSNGADEVQNTKERFTSLMCRNTQEDQNLCREVLSQVDGSSSSDPKAYIDAAVNDIRDSVTTALKMITTEEEFSKDDNGIKMAIDGCKEVMESALSSLDLFSNALRSNHDINSVQTQSPDLKNWLSAVISYQQSCVDIFEDQNEGERKIKEQLQSQSLDRVEKVSIITLDIVTGLAKIIEDLGVHVQMKPISSSGRVLREEVDNEGFPDWFSSSDRKLLAKDVKFYVPNVVVAKDGSGNFRTIQDAINSYPKTKNFQGRYIIYVKTGIYKENCTVPSHAMNVFMYGDGPTKTIVTASMSNVTHNLKTMLTATFVNKAGMFLAKDMRFENAAGAKGHQAVALRNVGDFSAFYNCHIHGYQDTLYVQANRQFYRNCEIAGTVDFIFGTSPGFLDICEYGNTGPAASVHGRIKWKGYRGIITKNEAMRFTVAEFLKGGPNNSADQWLNALGVPFDSGFLRP 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01107 492 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 210 IPR035513 -
Aip04g01107 492 Coils Coil 170 190 - -
Aip04g01107 492 Pfam Plant invertase/pectin methylesterase inhibitor 53 204 IPR006501 GO:0004857
Aip04g01107 492 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Aip04g01107 492 TIGRFAM PME_inhib: pectinesterase inhibitor domain 17 207 IPR006501 GO:0004857
Aip04g01107 492 Gene3D - 426 489 IPR012334 -
Aip04g01107 492 Gene3D - 259 425 IPR012334 -
Aip04g01107 492 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 200 IPR035513 -
Aip04g01107 492 SMART PMEI_2 45 205 IPR006501 GO:0004857
Aip04g01107 492 PANTHER PECTINESTERASE 427 489 - -
Aip04g01107 492 CDD PMEI-like_3 52 211 - -
Aip04g01107 492 PANTHER PECTINESTERASE 12 424 - -
Aip04g01107 492 PANTHER PECTINESTERASE 12 424 - -
Aip04g01107 492 PANTHER PECTINESTERASE 427 489 - -
Aip04g01107 492 Pfam Pectinesterase 263 428 IPR000070 GO:0030599|GO:0042545
Aip04g01107 492 SUPERFAMILY Pectin lyase-like 263 486 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01107 Aip-Chr4 16784939 16786845 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01107 425 489 Carbohydrate Esterase AT2G26450 35.385 6.84e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01107 K01051 - ahf:112794701 419.853