Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01105 ATGGAAAAGAAGGGAAAAATCATAGTATCAGTGGTTGTTTCGCTTTCGCTCATCCTTGTGGCGGGGGTTGCCACCGGGGTCATCGTGGCCGTTAATAACAAGAAAAGCAATGGCGCTGATGAAATGCAAAACACTAAAGAAAGGTTCACGAGTCTCATGTGCCGCAACACACAAGAGGATCAAAACCTCTGTCGCGAGGTTCTAAGCCAAGTTGATGGTTCCTCTTCTTCCGACCCAAAAGCATACATCGACACTGCCGTGAACGATATTAGAGACGGCGTCACCACCGCCCTAAAGATGATGACGACTGAGGAGGAGTTCTCTAAAGATGACAACGGAATCAAGATGGCCATTGATGGTTGCAAAGAAGTCATGGAGTCCGCATTGAGCAGCCTCGACCTTTTCAGCAATGTGCTTCACAGAAATCACGACATTAACTCTGTACAAATGCAAAGCCCCGACCTCAAGAACTGGCTTAGCGCCATTATCTCATATCAGCAATCTTGTGTTGACATTTTTGAAGATCAAAATGAAGGAGAGAGAAAAATCAAAGAACAACTACAAAGCCAGAGTTTGGATCGTGTTGAGAAGGTTTCCATCATAACTCTCGATATTGTTACTGGTTTGGCTAAGATCATTGAAGATCTTGGTCTACATGTGCAAATGAAACCCATTGCTTCTTCTAGGCGTGTTCTTCGCGAAGAGGTTGATAACGAGGGGTTCCCCGATTGGTTTTCCTCTTCAGATCGCAAGCTGTTGGCGAAGGATGTGAAGTTTCATGTTCCAAATGTAGTGGTTGCTAAAGATGGTAGTGGAAACTTTAGGACGATTCAGGATGCAATTAACTCGTACCCAAAGGCAAAGAATTTTCAGGGAAGGTACATTATCTATGTTAAGGCGGGGATCTATAAGGAGAATTGTACGGTTCCATCTCATGCAATAAACGTTTTCATGTATGGCGATGACCCTACTAAGACCATTATCACTGCTAGTATGAGCAATGTCACCCATAACCTCAAGACCATGTTAACTGCCACTTTCGTCTATCTAGTAACATTTTTCTAA 1065 0.4366 MEKKGKIIVSVVVSLSLILVAGVATGVIVAVNNKKSNGADEMQNTKERFTSLMCRNTQEDQNLCREVLSQVDGSSSSDPKAYIDTAVNDIRDGVTTALKMMTTEEEFSKDDNGIKMAIDGCKEVMESALSSLDLFSNVLHRNHDINSVQMQSPDLKNWLSAIISYQQSCVDIFEDQNEGERKIKEQLQSQSLDRVEKVSIITLDIVTGLAKIIEDLGLHVQMKPIASSRRVLREEVDNEGFPDWFSSSDRKLLAKDVKFHVPNVVVAKDGSGNFRTIQDAINSYPKAKNFQGRYIIYVKAGIYKENCTVPSHAINVFMYGDDPTKTIITASMSNVTHNLKTMLTATFVYLVTFF 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01105 354 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 210 IPR035513 -
Aip04g01105 354 CDD PMEI-like_3 52 211 - -
Aip04g01105 354 Coils Coil 170 190 - -
Aip04g01105 354 Pfam Plant invertase/pectin methylesterase inhibitor 53 204 IPR006501 GO:0004857
Aip04g01105 354 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 200 IPR035513 -
Aip04g01105 354 Gene3D - 220 351 IPR012334 -
Aip04g01105 354 SUPERFAMILY Pectin lyase-like 263 348 IPR011050 -
Aip04g01105 354 TIGRFAM PME_inhib: pectinesterase inhibitor domain 38 207 IPR006501 GO:0004857
Aip04g01105 354 Pfam Pectinesterase 263 349 IPR000070 GO:0030599|GO:0042545
Aip04g01105 354 PANTHER PECTINESTERASE 12 349 - -
Aip04g01105 354 PANTHER PECTINESTERASE 12 349 - -
Aip04g01105 354 SMART PMEI_2 45 205 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01105 Aip-Chr4 16715516 16716724 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01105 5 329 Carbohydrate Esterase AT3G62170 33.148 3.78e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01105 K01051 - ahf:112794701 412.149