Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01103 ATGGAAAAGAAGGGAAAAATCATAGTATCAGTGGTTGTTTCGCTTTCGCTCATCCTTGTGGCGGGGGTTGCCACCGGGGTCATCGTGGCCGTTAATAACAAGAAAAGCAATGGCGCTGATGAAATGCAAAACACTAAAGAAAGGTTCACGAGTCTCATGTGCCGCAACACACAAGAGGATCAAAACCTCTGTCGCGAGGTTCTAAGCCAAGTTGATGGTTCCTCTTCTTCCGACCCAAAAGCATACATCGACACTGCCGTGAACGATATTAGAGACGGCGTCACCACCGCCCTAAAGATGATGACGACTGAGGAGGAGTTCTCTAAAGATGACAACGGAATCAAGATGGCCATTGATGGTTGCAAAGAAGTCATGGAGTCCGCATTGAGCAGCCTCGACCTTTTCAGCAATGTGCTTCACAGAAATCACGACATTAACTCTGTACAAATGCAAAGCCCCGACCTCAAGAACTGGCTTAGCGCCATTATCTCATATCAGCAATCTTGTGTTGACATTTTTGAAGATCAAAATGAAGGAGAGAGAAAAATCAAAGAACAACTACAAAGCCAGAGTTTGGATCGTGTTGAGAAGGTTTCCATCATAACTCTCGATATTGTTACTGGTTTGGCTAAGATCATTGAAGATCTTGGTCTACATGTGCAAATGAAACCCATTGCTTCTTCTAGGCGTGTTCTTCGCGAAGAGGTTGATAACGAGGGGTTCCCCGATTGGTTTTCCTCTTCAGATCGCAAGCTGTTGGCGAAGGATGTGAAGTTTCATGTTCCAAATGTAGTGGTTGCTAAAGATAGTAGTGGGAACTCTAGGACGATTCAGGATGCAATTAACTCGTATCCAAAGGCAAAGAATTTTCAGGGAAGGTACATTATCTATGTTAAGACGGGGATCTATAAGGAGAATTGTACGGTTCCATCTCATGCAATAAACGTTTTCATGTATGGCGATGACCCTACTAAGACCATTATCACTGCTAGTATGAGCAATGTCACCCATAACCTCAAGACCATGTTAACTGCCACTTTCGTGAATAAAGCGGGAATGTTTCTTGCGAAGGACATGAGGTTTGAGAATGCAGCTGGTGCAAAAGGGCACCAAGCAGTTGCACTAAGAAATGTGGGAGATTTTTCAGCTTTCTATAACTGTCACATACACGGTTATCAAGACACCTTGTATGTTCAAGCTAACAGGCAATTCTACCGCAACTGCGAAATCGCTGGAACAGTTGACTTTATCTTTGTTGCCACTGGGGTCATCGTGGCCGTTAATAACAAGAAAAGCAATGGCGCTGATGAAATGCAAAACACTAAAGAAAGGTTCACGAGTCTCATGTGCCGCAACACACAAGAGGATCAAAACCTCTGTCGCGAGGTTCTAAGCCAAGTTGATGGTTCCTCTTCTTCCGACCCAAAAGCATACATCGACACTGCCGTGAACGATATTAGAGACGGCGTCACCACCGCCCTAAAGATGATGACGACTGAGGAGGAGTTCTCTAAAGATGACAACGGAATCAAGATGGCCATTGATGGTTGCAAAGAAGTCATGGAGTCCGCATTGAGCAGCCTCGACCTTTTCAGCAATGTGCTTCACAGAAATCACGACATTAACTTTGTACAAACGCAAAGCCCCGACCTCAAGAACTGGCTTAGCGCCGTTATCTCATATCAGCAATCTTGTGTTGACATTTTTGAAGATCAAAATGAAGGAGAGAGAAAAATCAAAGAACAACTACAAAGCCAGAGTTTGGATCGTGTTGAGAAGGTTTCCATCATAACTCTCGATATTGTTACTGGTTTGGCTAAGATCATTGAAGATCTTGGTCTACATGTGCAAATGAAACCCATTGCTTCTTCTAGGCGTGTTCTTCGCGAAGAGGTTGATAACGAGGGGTTCCCCGATTGGTTTTCCTCTTCAGATCGCAAGCTGTTGGCGAAGGATGTGAAGTTTCATGTTCCAAATGTAGTGGTTGCTAAAGATGGTAGTGGAAACTTTAGGACGATTCAGGATGCAATTAACTCGTACCCAAAGGCAAAGAATTTTCAGGGAAGGTACATTATCTATGTTAAGGCGGGGATCTATAAGGAGAATTGTACGGTTCCATCTCATGCAATAAACGTTTTCATGTATGGCGATGGCCCTACTAAGACCATTATCACTGCTAGTATGAGCAATGTCACCCACAACCTCAAGACCATGTTAACTGCCACTTTCGTGAATAAAGCGGGAATGTTTCTTGCGAAGGACATGAGGTTTGAGAATGCAGCTGGTGCAAAAGGGCACCAAGCAGTTGCACTAAGAAATGTGGGAGATTTTTCAGCTTTCTATAACTGTCACATACACGGTTATCAAGACACCTTGTATGTTCAAGCTAACAGGCAATTCTACCGCAACTGCGAAATCGCTGGAACAGTTGACTTTATCTTTGGTACATCTCCCGCCGTGATTCAGAGAAGCAAGCTCATCGTGAGGAAGCCCTTGCCAACTCAGTTCAATGTGTTGGTCGCAGATGGCACCATTGTTCCAGATCCAATGTTTGACTCTGTCAAGTACCAAATCAAGACTTATTTGGGTAGGCCATGGAAGGGAGGATCGAGAGCAGTAATCATGGAATCATATCTGGGTGACTGGATTAATTCGGAAGGGTGGGCCCCTCATGATGGCAATGAGATGAAAGGCTTCTTAGATATTTGTGAGTATGGAAACACCGGACCTGCTGCTTCAGTTCATGGAAGAATCAAGTGGAAGGGGTATCGTGGTATGATAACTAAGAATGAAGCCATGCGATTCACTGTTGCTGAATTCCTCAAGGGTGGACCTAACAATGGTGCTGACAGATGGTTGAACGCTCTTGGTGTTCCTTTTGACAGTGGTTTTCTAAGACCATAA 2904 0.4425 MEKKGKIIVSVVVSLSLILVAGVATGVIVAVNNKKSNGADEMQNTKERFTSLMCRNTQEDQNLCREVLSQVDGSSSSDPKAYIDTAVNDIRDGVTTALKMMTTEEEFSKDDNGIKMAIDGCKEVMESALSSLDLFSNVLHRNHDINSVQMQSPDLKNWLSAIISYQQSCVDIFEDQNEGERKIKEQLQSQSLDRVEKVSIITLDIVTGLAKIIEDLGLHVQMKPIASSRRVLREEVDNEGFPDWFSSSDRKLLAKDVKFHVPNVVVAKDSSGNSRTIQDAINSYPKAKNFQGRYIIYVKTGIYKENCTVPSHAINVFMYGDDPTKTIITASMSNVTHNLKTMLTATFVNKAGMFLAKDMRFENAAGAKGHQAVALRNVGDFSAFYNCHIHGYQDTLYVQANRQFYRNCEIAGTVDFIFVATGVIVAVNNKKSNGADEMQNTKERFTSLMCRNTQEDQNLCREVLSQVDGSSSSDPKAYIDTAVNDIRDGVTTALKMMTTEEEFSKDDNGIKMAIDGCKEVMESALSSLDLFSNVLHRNHDINFVQTQSPDLKNWLSAVISYQQSCVDIFEDQNEGERKIKEQLQSQSLDRVEKVSIITLDIVTGLAKIIEDLGLHVQMKPIASSRRVLREEVDNEGFPDWFSSSDRKLLAKDVKFHVPNVVVAKDGSGNFRTIQDAINSYPKAKNFQGRYIIYVKAGIYKENCTVPSHAINVFMYGDGPTKTIITASMSNVTHNLKTMLTATFVNKAGMFLAKDMRFENAAGAKGHQAVALRNVGDFSAFYNCHIHGYQDTLYVQANRQFYRNCEIAGTVDFIFGTSPAVIQRSKLIVRKPLPTQFNVLVADGTIVPDPMFDSVKYQIKTYLGRPWKGGSRAVIMESYLGDWINSEGWAPHDGNEMKGFLDICEYGNTGPAASVHGRIKWKGYRGMITKNEAMRFTVAEFLKGGPNNGADRWLNALGVPFDSGFLRP 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01103 967 SMART PMEI_2 45 205 IPR006501 GO:0004857
Aip04g01103 967 SMART PMEI_2 441 601 IPR006501 GO:0004857
Aip04g01103 967 TIGRFAM PME_inhib: pectinesterase inhibitor domain 435 603 IPR006501 GO:0004857
Aip04g01103 967 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 449 596 IPR035513 -
Aip04g01103 967 Pfam Pectinesterase 659 943 IPR000070 GO:0030599|GO:0042545
Aip04g01103 967 Pfam Pectinesterase 263 426 IPR000070 GO:0030599|GO:0042545
Aip04g01103 967 ProSitePatterns Pectinesterase signature 2. 806 815 IPR033131 -
Aip04g01103 967 PANTHER PECTINESTERASE 419 964 - -
Aip04g01103 967 PANTHER PECTINESTERASE 13 420 - -
Aip04g01103 967 Coils Coil 170 190 - -
Aip04g01103 967 CDD PMEI-like_3 448 607 - -
Aip04g01103 967 PANTHER PECTINESTERASE 419 964 - -
Aip04g01103 967 PANTHER PECTINESTERASE 13 420 - -
Aip04g01103 967 SUPERFAMILY Pectin lyase-like 659 961 IPR011050 -
Aip04g01103 967 SUPERFAMILY Pectin lyase-like 263 433 IPR011050 -
Aip04g01103 967 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 210 IPR035513 -
Aip04g01103 967 Gene3D Invertase/pectin methylesterase inhibitor family protein 443 606 IPR035513 -
Aip04g01103 967 Gene3D - 220 431 IPR012334 -
Aip04g01103 967 Gene3D - 655 964 IPR012334 -
Aip04g01103 967 Coils Coil 566 586 - -
Aip04g01103 967 CDD PMEI-like_3 52 211 - -
Aip04g01103 967 Pfam Plant invertase/pectin methylesterase inhibitor 449 600 IPR006501 GO:0004857
Aip04g01103 967 Pfam Plant invertase/pectin methylesterase inhibitor 53 204 IPR006501 GO:0004857
Aip04g01103 967 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 200 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01103 Aip-Chr4 16606169 16611305 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01103 470 964 Carbohydrate Esterase AT4G33230 37.500 3.97e-100 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01103 K01051 - gmx:100815015 573.933