Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01101 ATGGAAAAGAAGGGAAAAATCATAGTATCAGTGGTTGTTTTGCTTTCGCTCATCCTTGTGGTTCACGAGTCTCATGTGTCGCAACACACAAACCTCTGTCGCGAGGTTCTAAGCCAAGTTGATGGTTCCTCTTCTTCCGACCCAAAAGCATACATCGACACCGCCGTGAACGATATTAGAGACGGCGTCACCACCGCCCTAAAGATGATGACGACTGAGGAGGAGTTCTCTAAAGATGACAACGGAATCAAGATGGCCATTGATGGTTGCAAAGAAGTCATGGAGTCCGCATTGAGCAGCCTCGACCTTTTCAGCAATGTGCTTCACAGAAATCACGACATTAACTCTGTACAAATGCAAAGCCCCGACCTCAAGAACTGGCTTAGCGCCATTATCTCATATCAGCAATCTTGTGTTGACATTTTTGAAGATCAAAATGAAGGAGAGAGAAAAATCAAAGAACAACTACAAAGCCAGAGTTTGGATCGTGTTGAGAAGGTTTCCATCATAACTCTCGATATTGTTACTGGTTTGGCTAAGATCATTGAAGATCTTGGTCTGCATGTGCAAATGAAACCCATTGCTTCTTCTAGGCATGTTCTTCGCGAAGAGGTTGATAACGAGGGGTTCCCCGATTGGTTTTCCTCTTCAGATCGCAAGCTGTTGGCGAATGATGTGAAGTTTCATGTTCCAAATGTAGTGGTTGCTAAAGATAGTAGTGGGAACTCTAGGACGATTCAGGATGCAATTAACTCGTATCCAAAGGCAAAGAATTTTCAGGGAAGGTACATTATCTATGTTAAGGTGGGGATCTATAAAGAGAATTGTACGGTTCCATCTCATGCAATAAACGTTTTCATGTATGGCGATGGCCCTACTAAGACCATTATCACTGCTAGTATGAGCAATGTCACCCACAACCTCAAGACCATGTTAACTGCCACTTTCGTGAATAAAGCGGGAATGTTTCTTGCGAAGGACATGAGGTTTGAGAATGCAGCTGGTGCAAAAGGGCACCAAGCAGTTGCACTAAGAAATGTGGGAGATTTTTCAGCTTTCTATAACTGTCACATACACGGTTATCAAGACACCTTGTATGTTCAAGCTAACAGGCAATTCTACCGCAACTGCGAAATCGCTGGAACAGTTGACTTTATCTTTGGTACATCTCCCGCCGTGATTCAGAGAAGCAAGCTCATCGTGAGGAAGCCCTTGCCAACTCAGTTCAATGTGTTGGTCGCAGATGGCACCGTCGAGAGGAACATGACTACTGGCATTCCTTTTGACAGTGGTTTTCTAAGACCATAA 1308 0.4404 MEKKGKIIVSVVVLLSLILVVHESHVSQHTNLCREVLSQVDGSSSSDPKAYIDTAVNDIRDGVTTALKMMTTEEEFSKDDNGIKMAIDGCKEVMESALSSLDLFSNVLHRNHDINSVQMQSPDLKNWLSAIISYQQSCVDIFEDQNEGERKIKEQLQSQSLDRVEKVSIITLDIVTGLAKIIEDLGLHVQMKPIASSRHVLREEVDNEGFPDWFSSSDRKLLANDVKFHVPNVVVAKDSSGNSRTIQDAINSYPKAKNFQGRYIIYVKVGIYKENCTVPSHAINVFMYGDGPTKTIITASMSNVTHNLKTMLTATFVNKAGMFLAKDMRFENAAGAKGHQAVALRNVGDFSAFYNCHIHGYQDTLYVQANRQFYRNCEIAGTVDFIFGTSPAVIQRSKLIVRKPLPTQFNVLVADGTVERNMTTGIPFDSGFLRP 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01101 435 SUPERFAMILY Pectin lyase-like 232 431 IPR011050 -
Aip04g01101 435 ProSitePatterns Pectinesterase signature 2. 379 388 IPR033131 -
Aip04g01101 435 Pfam Plant invertase/pectin methylesterase inhibitor 28 173 IPR006501 GO:0004857
Aip04g01101 435 SMART PMEI_2 21 174 IPR006501 GO:0004857
Aip04g01101 435 CDD PMEI-like_3 26 180 - -
Aip04g01101 435 PANTHER PECTINESTERASE 28 427 - -
Aip04g01101 435 PANTHER PECTINESTERASE 28 427 - -
Aip04g01101 435 Gene3D - 189 432 IPR012334 -
Aip04g01101 435 Pfam Pectinesterase 232 428 IPR000070 GO:0030599|GO:0042545
Aip04g01101 435 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 179 IPR035513 -
Aip04g01101 435 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 169 IPR035513 -
Aip04g01101 435 Coils Coil 139 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01101 Aip-Chr4 16568857 16570603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01101 29 426 Carbohydrate Esterase AT2G26450 37.406 1.84e-78 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01101 K01051 - gmx:100815015 432.565