Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01095 ATGTGCGGAGGTGCTATCATCTCAGACTTCATTGGTGTCAAGCGTGGCCGGAAATTGCTTTCTCAGGACTTGTGGGCTGAGCTTGATCCTTTCTCCGACTTCCTTGGTTTTGACGCCGCCACGGTCACCGCCAACAACTCCAACAACAAGGATCAGCCACTAATTCCTCAAATCCCAGATAACAACAACAACAACAACAAAGTGATAGCATGTGACAAGGTACTAGGAAAGGAAAAAACGGTTGTTGGTGGTGGCGCAGAAGATAAGAAGACGAAAGGTCCCAATCCACGTCAGAGGGTCCGTAAGAACCTCTACAGAGGAATCAGGCAGAGGCCCTGGGGCAAGTGGGCTGCAGAGATAAGGGACCCACACAAAGGGGTCCGTGTCTGGCTCGGCACGTTCAACACTGCCGAAGAGGCCGCTAGAGCCTACGACGACGCTGCCAGACGCATCCGGGGCAACAAAGCCAAGCTTAATTTTCCGGATGCTTCTGACGACAACGTCGTTGTAGCCCCTCCATCGGCCAAGAAGCAGTGTCTTGGCAATGAGATGCTGTCTCAGGTCGAAATTCAGTCACTTGTGCCACCACTTATCTCTACCATGCAAACTGGCAGCGACAATGGAAGCATAGAAGGATTGGATTCTGACCTATCACAGCAGATCTCGGATCTTGAATGGTTTCTCGGATCGGAGAATGAGCAACCGTTGCAAATAGGTGGTGATGCCGTTTGGAACGACGTTAACAACTACAACGATAACAACAACAATATGGACCTGTGGATGCTGGACGACGTCGTTATGCCCAGCCGTTACATGGTGTAA 822 0.5085 MCGGAIISDFIGVKRGRKLLSQDLWAELDPFSDFLGFDAATVTANNSNNKDQPLIPQIPDNNNNNNKVIACDKVLGKEKTVVGGGAEDKKTKGPNPRQRVRKNLYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFNTAEEAARAYDDAARRIRGNKAKLNFPDASDDNVVVAPPSAKKQCLGNEMLSQVEIQSLVPPLISTMQTGSDNGSIEGLDSDLSQQISDLEWFLGSENEQPLQIGGDAVWNDVNNYNDNNNNMDLWMLDDVVMPSRYMV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01095 273 PANTHER DNA-BINDING DOMAIN 1 173 IPR044808 GO:0003700|GO:0009873
Aip04g01095 273 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Aip04g01095 273 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Aip04g01095 273 Gene3D AP2/ERF domain 104 162 IPR036955 GO:0003700|GO:0006355
Aip04g01095 273 SUPERFAMILY DNA-binding domain 104 162 IPR016177 GO:0003677
Aip04g01095 273 Pfam AP2 domain 105 153 IPR001471 GO:0003700|GO:0006355
Aip04g01095 273 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Aip04g01095 273 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Aip04g01095 273 PANTHER EREBP TRANSCRIPTION FACTOR 1 173 - -
Aip04g01095 273 CDD AP2 105 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01095 Aip-Chr4 16420928 16423038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01095 1 266 AP2-EREBP Transcription Factor Family AT3G16770 41.781 2.27e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip04g01095 AP2 5.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01095 K09286 - gmx:100817253 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01095 04 16420928 16423038 Aip04g01095 04 16420928 16423038 ECH