Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01080 ATGAAGAACAATAATAGGAATAACAACCCTGCACCACTTTGCCCTCCATTACAAGTCCAATATGATTATCATCATGGATATGATTATTCTTCCTTATTGTTCTCCTCATCATACTCGTTGGCGGCACCAGCCAACACTGCTGCCGCCACCGCAGCTCCTAACTCAACATCCTCTCCTCACTCTGGCACCGGAAAATACCGAGGTACGCGGTGTCGGAGCGGAAAGTGGGTGTCAGAGATAAGAGAGCCGCGGAAGTCAAACCGCATATGGCTTGGGACCTACCCAACGCCGGAGATGGCTGCCACCGCTTACGATGTAGCGGCTCTTGCATTAAGAGGTCCTAATGCGTATCTCAACTTCCCCAATTTCATGCTCGCTTACCCTATTCCTGCCTCCTTATCTGCCCCTGATATTCGCGCTGCCGCGGCCGCTGCAGCCGAGGCAAGGCTTGTTACACCACCACCGCCACCTCCACTGCCAACACCACCGGAAAACCCTTCAGAGATTCTGGGGGAATATTTCGATGAAGAGGAGGTATGGAATATGCCGAGCTTGATCGAAGACATGGCCAGGGGAATGCTTATGAGTCCCCCAAGAATGGTGGAGTCCTTCTCCTCTGAAGACTTCGCCGAGTGCTATTCGGATCTATATAGTACTCTTTGGATGGAGGACAGACTGCTTCTGTCAGTTGACAACTCATGCACGCAGACAGTGATGGACGGGGAAGCGCTGCTATGCAGATTTGGCGTGGCACGATGGTTGCGCAGGGTGAAGGAGACACTAAATGGTGTCGCGGCAAGAGGATTTTCATGCAGCGAATTCATGATGGGACTGCGTCTCGACAAAAAGGGTTGGAAGAGAGGATGTCGCGTTGTGACCAGAAGAATATATAAGAAAGGAGAGGCTTGGCGGTGCAATGATACGACTTAG 930 0.5151 MKNNNRNNNPAPLCPPLQVQYDYHHGYDYSSLLFSSSYSLAAPANTAAATAAPNSTSSPHSGTGKYRGTRCRSGKWVSEIREPRKSNRIWLGTYPTPEMAATAYDVAALALRGPNAYLNFPNFMLAYPIPASLSAPDIRAAAAAAAEARLVTPPPPPPLPTPPENPSEILGEYFDEEEVWNMPSLIEDMARGMLMSPPRMVESFSSEDFAECYSDLYSTLWMEDRLLLSVDNSCTQTVMDGEALLCRFGVARWLRRVKETLNGVAARGFSCSEFMMGLRLDKKGWKRGCRVVTRRIYKKGEAWRCNDTT 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01080 309 MobiDBLite consensus disorder prediction 49 69 - -
Aip04g01080 309 Gene3D AP2/ERF domain 65 122 IPR036955 GO:0003700|GO:0006355
Aip04g01080 309 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 52 221 - -
Aip04g01080 309 Pfam AP2 domain 66 113 IPR001471 GO:0003700|GO:0006355
Aip04g01080 309 MobiDBLite consensus disorder prediction 49 64 - -
Aip04g01080 309 ProSiteProfiles AP2/ERF domain profile. 65 121 IPR001471 GO:0003700|GO:0006355
Aip04g01080 309 SMART rav1_2 65 127 IPR001471 GO:0003700|GO:0006355
Aip04g01080 309 CDD AP2 65 122 IPR001471 GO:0003700|GO:0006355
Aip04g01080 309 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 52 221 - -
Aip04g01080 309 SUPERFAMILY DNA-binding domain 65 121 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01080 Aip-Chr4 15903182 15905433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01080 66 208 AP2-EREBP Transcription Factor Family AT5G52020 54.902 2.99e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip04g01080 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01080 - - adu:107483526 383.259