Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01073 ATGGAAGATGGTCCGACAACTATAGTTGACAATCTTGCGGGCATTTCAGATGCATTTGATACGGTTGATAGTGGTGGCTACTCAGAGGACGTGACATCAGAAGCATTGAAGCAGACGCAGGAAAATGGCAGTATGTCTGTTGAAGGAATTTCTTTAACTGCCGATGATATTATACAGATGGAGTTTAGTGATCCTAAGCAGGCAGCACGTTTGTATGAGGAGTACAGCCATGTGAGAGGCTTTAGAGATAAGAAATGGCTTCAGATGCATCATCGTAAAAGGGAGCATAAGGTTGTTACTAGGTGTGGGTGTCCAGCTGAGATGCGGATAAAACCAAGAGATAGCACCGGAAAATGGTACGTGTCACGTTTTGTGGACAATCACAACCATGATCTTCTACCTGCCAAGTTTGTTGAGTACTTGCCTTCACACCGTAAAATTTCAGATGTTGACATAGTCCATTTGGATAGCATGAGACAAGTTGGGATATCAATTCCAAAAATATATGAGTCGATAGCTGCACAAGCTGGTGGTTTTAATCGAGTTTCATTTACTAAGCGAGACATGTACAATGAAGTTAGGCGGCAGCGAGCCCTTCAAAATGGCGATGTGAATGCTGCCTTGAGGGCGTTAGCCAATGCATCAAGGATTGATGATAGAATGTTTTGGCGGTATGAAGTTGGGGTTGGGAATCACATGTGTGATTTGTTTTGGAGCGATGGACGTAGTCAAGAAGACTACAAATTATTTGGAGATGTTCTTGCTTTTGATGCAACATATGGACGGAATAAATACAATCTTCCGGTGATTGTTTTTTCCGGGGTGAATCATCACATGCAAACTTGTGTTTTTGGCACTGCAATGGTTTCCTGTGAATCACAATCTTCATACGTGTGGGTCTTGACGAAGTTCCTCGAGTGCATGGGTGGAAAACCACCTACGGCGGTTATCACTGACGGGGATAGATCTATGCATATAGCAATCcagcaagtgtttcccgaagctcaccatcggctctgtgcctggcatttgATAAGGAATGCGACAACCAATGTTTGTAATCCAAGATTCACATCTTTGTTCAGACATTGCATGCTTGCAGACTTTGAGGTTGAAGAGTTTGAAATGCACTGGCAAGCAATGGTCGAAGAATGTGGGACAAGTGACCATGAGTGGGTTAAGGATTTGTACACGAAGAAGTCTAGCTGGGCAACGGCATACATTCGTGGTTCTTTCTTTGCAGGGATAAGGACAACCTCCCGGTGTGAGTCATTGCATGCAAAGCTTGGTCGCTTTGTTGAGAAGAGATATGGAGTCCTAGATTTTGTCACAAACTTCCAGCGATGTGTTGATTTTCTCAGAGACAATGAGGACGAGCTAGAGTTTCGTTCATCTTATGGCACCCCAGTCATTCAGACTCAGTTTCCAGAGTTAGAAAAGTCAGATGCGTTGTGTTATACAAGGGAAATTTTTGTTAGATATCGTGAGTCTCTAAAACGGTTGGTTCGTGTTACGATTGTGGAGTGCATCGAAGCAGATGATATTTGCGTTTACATCACACAGAAATATCGTCGGCCGGATAGGACATGGAATGTCACGCAGAATTCATCACAGGACACATTTCATTGTACTTGTCTCAGAATGGAGTCCTTTGGCCTCCCTTGTGTACATATCATTGCTGTTCTTGTTCGGTTAGACATTACTTCGCTTCCCAATAGTCTGGTTCTGCCGCGGTGGTCCAAGATAGCGAGAATGGATTTGTGCCGGGATAGGGTATGTAACCCACACATTGATCCAGAAGCAACTTATCGGGCAAGGATTAGAGCCCTACTTCAACACTGTAAGCAGCGTTTTGCAAAGGTTGCTTGTATGAGGGAGGAAGACTATAAAACATATTGTCAAAAGGTTGTGCATGAGACAAATATGTTGGAAATAAAGAATGGATTGCAATGTCAAGCTACAAGCACGCATTCTGTACCCTGGGAAGGGGGAGTAAAGGACCCAATAGGCGTTAGGACGAAGGGAACCGGCAGAGGCAACGAACCTGCAGGGTCTAGAGGCATTAAGCGAAGGAGATGCAGCACCTGCGGCGTTCTCGGGCATCGTAGGACGCGATGTCCAAATGGGCCCACACCATCGCGGCAATGTGCTCAGGAGCCGGATATACATCCTTCAACAGAGACATTTGAAACAGCAAGTCTAAACCCATTCAGAAATGATACTACATTCTAA 2232 0.4341 MEDGPTTIVDNLAGISDAFDTVDSGGYSEDVTSEALKQTQENGSMSVEGISLTADDIIQMEFSDPKQAARLYEEYSHVRGFRDKKWLQMHHRKREHKVVTRCGCPAEMRIKPRDSTGKWYVSRFVDNHNHDLLPAKFVEYLPSHRKISDVDIVHLDSMRQVGISIPKIYESIAAQAGGFNRVSFTKRDMYNEVRRQRALQNGDVNAALRALANASRIDDRMFWRYEVGVGNHMCDLFWSDGRSQEDYKLFGDVLAFDATYGRNKYNLPVIVFSGVNHHMQTCVFGTAMVSCESQSSYVWVLTKFLECMGGKPPTAVITDGDRSMHIAIQQVFPEAHHRLCAWHLIRNATTNVCNPRFTSLFRHCMLADFEVEEFEMHWQAMVEECGTSDHEWVKDLYTKKSSWATAYIRGSFFAGIRTTSRCESLHAKLGRFVEKRYGVLDFVTNFQRCVDFLRDNEDELEFRSSYGTPVIQTQFPELEKSDALCYTREIFVRYRESLKRLVRVTIVECIEADDICVYITQKYRRPDRTWNVTQNSSQDTFHCTCLRMESFGLPCVHIIAVLVRLDITSLPNSLVLPRWSKIARMDLCRDRVCNPHIDPEATYRARIRALLQHCKQRFAKVACMREEDYKTYCQKVVHETNMLEIKNGLQCQATSTHSVPWEGGVKDPIGVRTKGTGRGNEPAGSRGIKRRRCSTCGVLGHRRTRCPNGPTPSRQCAQEPDIHPSTETFETASLNPFRNDTTF 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01073 743 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 75 618 IPR031052 GO:0006355
Aip04g01073 743 SMART 26again6 541 568 IPR006564 GO:0008270
Aip04g01073 743 Pfam SWIM zinc finger 543 563 IPR007527 GO:0008270
Aip04g01073 743 Pfam MULE transposase domain 253 347 IPR018289 -
Aip04g01073 743 MobiDBLite consensus disorder prediction 662 688 - -
Aip04g01073 743 ProSiteProfiles Zinc finger SWIM-type profile. 528 566 IPR007527 GO:0008270
Aip04g01073 743 Pfam FAR1 DNA-binding domain 79 134 IPR004330 -
Aip04g01073 743 PANTHER OS02G0262500 PROTEIN 75 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01073 Aip-Chr4 15722001 15724432 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip04g01073 MULE 6.6e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01073 - - aip:107620408 883.634