Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01060 ATGAATCTTAGCAACGTCAAGGGATCCACCATGTCAACGCCTAGTTCATCAGGTTCGCATCTGAGGTCCACCGGAGATGCTGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTTCTGGTGGTGGATGATGACCCCACCTGCCTCATGATCCTTGAGAAGATGCTTAAAGCTTGCCTCTATGAAGTTACAAAATGCAAGTGTGCTGAGGCTGCATTGGAACTTCTGAGAGGGAACAAGAATGGATTTGACATTGTTATAAGTGATGTGCATATGCCTGACATGGATGGATTTAAGCTTTTGGAGCATATTGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCCGCAGACGATGGAAAGCATGTTGTTATGAAGGGTGTGACTCATGGTGCTTGTGATTACCTAATTAAACCCGTGCGAATCGAGGCTCTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGACTGGTTGGAGAGATCCAGAGCAATCGGGAAGCATAGATGAAGGAGATCGTCAACAAAAGGTATCTGATGATGCGGATTACTCATCCTCAGCAAATGAAGGGAAAAGCTCAAAGAAGAGAAGGGACGAGGAAGAAGATGCTGATGAGAGGGATGATAGTTCCACTTTGAAGAAGCCGCGCGTGGTTTGGTCTGTTGAGCTTCATCAACAGTTTATGGCTGCTGTGAATCAACTTGGAATTGACAAGGCTGTTCCGAAAAAGATTCTGGAATTGATGAATGTTCCTGGACTTACCAGAGAAAACGTCGCTAGCCACCTTCAGAAATACCGATTGTATCTTCGGAGGCTGAGTGGAGTTTCCCAGCAGCAGAACAACTTGAACAATTCCTTCATGAACCCACAAGATCCAACATTTGGGTCAACATCGATCAATGGAATTGACCTTCAAGCCCTTTCAGTCGCTGGCCAGCTCCCAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTGGCAGATCAACTGCAAAACCGGTTATGTCCATGCCTCTAGTTGAGCAACGGAATCTTTTCAGTTTCGAAAGCCCGAAATTAAGATTTGGAGAAGGGCAAATGCAGCATTTGAATACCAATAAACCGATAAACTTGCTTCACGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAATCTGCACCAATCTGCCCAATCCCTTGGTAACTTGAATATGCGAATCAATGCTTCTGTCGCACAGAGAAGCCCCTTGTTGATGCAAATGGGTCAATCCCAACCAAGAGGTCAGATGATAGGTGAAAATGGTTCTCATGTTAACCAGCTTCCAACTTCATTGTTGCAACCAACAGTACCAAACCGAATTTCCAACGGTGTTATCAGAAATGGGATTGCTAGCTCCAGCAACATAAATGCTGCTTATAATCAAGTACCACAAAGCTCTTCATTTTTGAATTTCCCCATGAATCAAACTAACGAGATGTCAGTCAGAAGTTTCCCTCTTGGAAGCCATCCAGGTATATCGAATATCACAACAAAAGGAATGTTACAAGAGGAAGTTACTTCAGGAATCAAAGGATCCAGTGGCTTTGTTCCGAATTATGATATGTTTAACGAACTCCAACCTCAAAAATCCCAAGATTGGGACTTAACAACCGCTGGCCTGACATATGATGCTACTCAGCATTCAAATCATGTACAAGGTAACACTGATGTCTCAGTCTCACCATCAGTTTTGGTCCATCCGGGTTTTACATCTATTCAACAAACTGGACAAAATAGAGATACTACTTCTTCAATGGGGAAAGACATGTTCTCCATAGGTGAAGGCATGGATCAAGGTAATCTCCAAAGCATTAGTCAGCCCCAGAATCCGCTTCTCATTGACAATTCGGTAAGAGTGAAGGCTGAAAGAGTTCCTGATGCAAGCTCCCAGACTAACTTCTTCCCCGAGCAATACGGGCAGGAGGATCTTATGAGTGCACTTCTGAAACAGGAAGGCATTGGACTAGCCGAGAATGAGTTTGACTTCGACGGATATTCCTTAGACAACATTCCAGTCTAG 2043 0.4474 MNLSNVKGSTMSTPSSSGSHLRSTGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLKACLYEVTKCKCAEAALELLRGNKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKHVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKTGWRDPEQSGSIDEGDRQQKVSDDADYSSSANEGKSSKKRRDEEEDADERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQNNLNNSFMNPQDPTFGSTSINGIDLQALSVAGQLPAQSLAKLQAAGLGRSTAKPVMSMPLVEQRNLFSFESPKLRFGEGQMQHLNTNKPINLLHGIPTNMEPKQLANLHQSAQSLGNLNMRINASVAQRSPLLMQMGQSQPRGQMIGENGSHVNQLPTSLLQPTVPNRISNGVIRNGIASSSNINAAYNQVPQSSSFLNFPMNQTNEMSVRSFPLGSHPGISNITTKGMLQEEVTSGIKGSSGFVPNYDMFNELQPQKSQDWDLTTAGLTYDATQHSNHVQGNTDVSVSPSVLVHPGFTSIQQTGQNRDTTSSMGKDMFSIGEGMDQGNLQSISQPQNPLLIDNSVRVKAERVPDASSQTNFFPEQYGQEDLMSALLKQEGIGLAENEFDFDGYSLDNIPV 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01060 680 Gene3D - 36 165 - -
Aip04g01060 680 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 653 IPR045279 GO:0009736
Aip04g01060 680 SMART REC_2 36 148 IPR001789 GO:0000160
Aip04g01060 680 Pfam Response regulator receiver domain 38 146 IPR001789 GO:0000160
Aip04g01060 680 SUPERFAMILY CheY-like 35 156 IPR011006 -
Aip04g01060 680 Gene3D - 211 273 - -
Aip04g01060 680 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 214 267 IPR006447 GO:0003677
Aip04g01060 680 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 653 - -
Aip04g01060 680 PIRSF RR_ARR_type-B 14 672 IPR017053 GO:0003677|GO:0003700|GO:0009736
Aip04g01060 680 MobiDBLite consensus disorder prediction 155 211 - -
Aip04g01060 680 MobiDBLite consensus disorder prediction 189 211 - -
Aip04g01060 680 MobiDBLite consensus disorder prediction 155 179 - -
Aip04g01060 680 MobiDBLite consensus disorder prediction 1 26 - -
Aip04g01060 680 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 270 IPR017930 -
Aip04g01060 680 CDD REC_typeB_ARR-like 38 152 - -
Aip04g01060 680 ProSiteProfiles Response regulatory domain profile. 37 152 IPR001789 GO:0000160
Aip04g01060 680 Pfam Myb-like DNA-binding domain 216 266 IPR001005 -
Aip04g01060 680 SUPERFAMILY Homeodomain-like 211 271 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01060 Aip-Chr4 15431237 15436408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01060 71 680 Response Regulator Gene Family AT3G16857 51.216 5.10e-180 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aip04g01060 Response_reg 5.3e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01060 - K14491 gmx:100809583 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01060 04 15431237 15436408 Aip04g01060 04 15431237 15436408 ECH
Aip01g02863 01 130607174 130611476 Aip04g01060 04 15431237 15436408 PCT