Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01057 ATGTCTCTGAGGCCTAGTGAGAGGACGGAGGTTCGCCGGAACCGGTACAAGGTGGCGGTGGACGCCGATGAGGGTCGCCGGAGGAGGGAGGACAACATGGTGGAGATCCGAAAGAGTAAGCGCGAGGAGAGCCTCCTCAAGAAGCGCCGCGAGGGCCTCCAAGCTCAACAGCTCCTCCAGCAGCAGCAACAATTTCCAACCAATGTCCAAGCCTCATCCATCATGGAGAAAAAGTTGGAGAGTCTTCCTGCTATGGTCGCTGGGGTGTTGTCCAATGATAACAGCCAGCAACTGGAAGCTACCACACAATTTAGGAAGCTGCTCTCAATCGAGCGCAGCCCACCGATTGAGGAAGTTATCCAAGCTGGTGTTGTGCCACGGTTTGTTGAGTTTCTCCATAGGGACGATTTCCCCCAACTTCAGTTTGAGGCTGCATGGGCTCTCACAAACATAGCGTCTGGAACTTCTGAGAACACTAAGGTGGTAATTGATCACGGGGCAGTCCCAATATTTGTGAAGTTACTTGGTTCTCCAAGTGATGATGTTCGAGAACAGGCTGTTTGGGCTTTGGGAAATGTCGCTGGTGACTCTCCTAGGTGCCGTGATCTTGTTCTCAGCCATGGTGCTTTGATCCCACTATTAGCCCAGCTGAATGAGCATGCTAAACTTTCAATGCTGAGAAATGCCACATGGACTCTGTCAAACTTCTGCAGGGGGAAGCCACAGCCTCCATTTGAACACGTGAAGCCAGCACTTCCAACTCTTGAGCGGTTGGTCTTTTCAAATGATGAAGAGGTTCTGACAGATGCATGCTGGGCACTTTCGTATCTTTCTGATGGAACAAATGACAAAATCCAAGCCGTTATTGAGGCAGGTGTATGTAGCAGGCTGGTGCAGCTTCTTTTGCACCCATCTCCTTCGGTGCTGATTCCTGCTCTTCGTACTGTGGGAAATATTGTGACAGGAGACGACATTCAAACTCAGGCTATTATCAATCATGGTGCACTCCCATGCCTTATGAGCCTGTTGACGCATAATCACAAAAAGAGCATCAAGAAAGAAGCTTGCTGGACTATTTCAAACATTACAGCTGGAAATAGAGATCAAATACAGGCAAGCCAGTTAATCCCAATTATTTGGTGCTCTATTGATGCTGAATCACATGCTGTCATTGACGCTGGTCTGATTGCTCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCATGGGCAATCTCTAATGCTACATCTGGTGGTAGTCATGAGCAGATCAAGTATTTGGTTAGCCAAGGTTGCATTAAGCCTCTGTGTGATCTGCTTGTTTGTCCCGACCCAAGAATTGTCACTGTCTGTTTAGAAGGTCTGGAGAATATTCTAAAGGTCGGGGAATCTGAGAAGGCCATGGGTAACAGTGGAGATGTTAACTTGTATGCTCAGATGATTGATGATGCTGAAGGATTGGAGAAAATTGAAAACCTGCAGAGTCATGACAATAATGAAATATATGAGAAGGCTGTTAAAATTCTCGAAACATATTGGTTGGAGGATGAAGATGAGACACTACCTCCAGGCGACGTTGCTCAACCTGGTTTCAGTTTTGGTGGCAATGAGGTTCCAGTCCCATCTAGCGGATTCAACTTTAGTTGA 1665 0.4715 MSLRPSERTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQLLQQQQQFPTNVQASSIMEKKLESLPAMVAGVLSNDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLHRDDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEHVKPALPTLERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVQLLLHPSPSVLIPALRTVGNIVTGDDIQTQAIINHGALPCLMSLLTHNHKKSIKKEACWTISNITAGNRDQIQASQLIPIIWCSIDAESHAVIDAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGESEKAMGNSGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPPGDVAQPGFSFGGNEVPVPSSGFNFS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01057 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 123 166 IPR000225 GO:0005515
Aip04g01057 554 PANTHER IMPORTIN SUBUNIT ALPHA 2 544 - -
Aip04g01057 554 Pfam Importin beta binding domain 12 102 IPR002652 GO:0006606|GO:0061608
Aip04g01057 554 SMART arm_5 383 423 IPR000225 GO:0005515
Aip04g01057 554 SMART arm_5 196 238 IPR000225 GO:0005515
Aip04g01057 554 SMART arm_5 112 153 IPR000225 GO:0005515
Aip04g01057 554 SMART arm_5 155 195 IPR000225 GO:0005515
Aip04g01057 554 SMART arm_5 426 466 IPR000225 GO:0005515
Aip04g01057 554 SMART arm_5 240 279 IPR000225 GO:0005515
Aip04g01057 554 SMART arm_5 323 364 IPR000225 GO:0005515
Aip04g01057 554 SMART arm_5 281 321 IPR000225 GO:0005515
Aip04g01057 554 Pfam Atypical Arm repeat 481 527 IPR032413 -
Aip04g01057 554 Coils Coil 36 56 - -
Aip04g01057 554 Gene3D - 11 50 IPR036975 GO:0006606
Aip04g01057 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 369 IPR000225 GO:0005515
Aip04g01057 554 PIRSF Importin_alpha 2 553 IPR024931 GO:0005737|GO:0006606|GO:0061608
Aip04g01057 554 Gene3D - 80 520 IPR011989 -
Aip04g01057 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 166 208 IPR000225 GO:0005515
Aip04g01057 554 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Aip04g01057 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 422 IPR000225 GO:0005515
Aip04g01057 554 SUPERFAMILY ARM repeat 12 525 IPR016024 -
Aip04g01057 554 PANTHER IMPORTIN ALPHA 2 544 - -
Aip04g01057 554 Pfam Armadillo/beta-catenin-like repeat 251 278 IPR000225 GO:0005515
Aip04g01057 554 Pfam Armadillo/beta-catenin-like repeat 155 194 IPR000225 GO:0005515
Aip04g01057 554 Pfam Armadillo/beta-catenin-like repeat 326 364 IPR000225 GO:0005515
Aip04g01057 554 Pfam Armadillo/beta-catenin-like repeat 389 422 IPR000225 GO:0005515
Aip04g01057 554 Pfam Armadillo/beta-catenin-like repeat 427 464 IPR000225 GO:0005515
Aip04g01057 554 Pfam Armadillo/beta-catenin-like repeat 113 153 IPR000225 GO:0005515
Aip04g01057 554 Pfam Armadillo/beta-catenin-like repeat 282 320 IPR000225 GO:0005515
Aip04g01057 554 Pfam Armadillo/beta-catenin-like repeat 197 238 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01057 Aip-Chr4 15376990 15380360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01057 148 414 U-box Gene Family AT1G23030 21.642 6.86e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01057 K15042 - gmx:100780020 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01057 04 15376990 15380360 Aip04g01057 04 15376990 15380360 ECH
Aip04g01057 04 15376990 15380360 Aip09g01600 09 33558497 33561834 ECH