Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01052 atggctgaaaagaatgatgggctggttgatgtttactttgagcatgcagtttcaacaccagaaattcttgaggggaatgagattgttgtgtatgttgagggtgaCCTTGATAAGCTCAGAGTGCTTAGTGATGAACCCGACAATGAACCCCTACTAGACAAGATCCTAAACCAAACTAATATACCCACTGCCCCTGCTAATGACACTCCATTCTCTAACAACAATGAACCAATGCATAATACCTCACCACCCAAGAGCACAGAACCAACAGAACCTGGTGCTAATAACCCAACACCCCAAAAAAATAATCCCACTACTACATCCAACTCTAATCCTAGCCAAGCTACTACTGCAAAGCCTGTTAGTAAGACTCCTCTAGTTACCCCAAAAACTAAACCCATTTCAAAGGCCAACCCAAATCCGAAATCCAATACTACATCCTCCTCCAAGGCCAAGGCCAACCTGAAGAATGTCTCCAAGCCCAAGCCCAACCTGAATTCTGTGTCCAAGCCCAAAGTAAATCCAAAGCCCAAAATTACTACTAAAACCTATTGCACAAGGTCTGGTTCAAAAGTGAGGAAGTTGAAAAAAAAATGTGAAACCAAGAAAAGAGACTCTAGGTTGAAGCATGCACCTGCTGAGGCACTTGCAAAGTCTAAGAGGAAGTTTATTAACGATGATGATGCATTGGTGGTGGATGATGAGGAGTGTGAGGTGGACTTAAGTTTCTTAGAAGTCCCTGTCACAGGAGATGAAGGCCTGGACAATGCTTTGGATCCTGGAACAGAGTCTGATGGGGCCAACTCTTGGCACTCTGAGGAAATAAAGACTCCTCCTCCTTCGGAAGATGAATTTTCTGAAGAAGAGCCAGATGATTTTGCTAACCCTTCCTCCTTCTGCCACCCGCCACCGATCCTAACCTGTGTTTCAGATTTGTCTCAGGATGAGATTGGCACAATTGAGGAAACACCAGAGGAGACAATTTTATCAAGACAGACTTCTGTCAACCTTGTTCCTTTTATTGGTCAGAGATTTGTTTCTCAAGAAGCTGCTTATGAATTCTATTGCAGTTTTGCTAAGCAGTGTGGCTTTTCAATTCGGCGACACCGCACTCGAGGGAAGGATGGTGTTGGTCGTGGAGTCACAAGGAGGGATTTTACTTGCCATCGTGGTGGATACCCCCAGGTCAAACCTTCTGATGATGGGAAGATGCAAAGGAACCGCAAATCATCTCGTTGTGGTTGCCAAGCATACTTGCGTATTGTTAAAAAGTCGGATTTTGATGTCCCTGAGTGGCGTGTTACTGGCTTTAGCAATGTCCACAATCACGAGTTGTTAAAATCTAATGAGTCTTTCAGAAATGTTGAAAGAGACAATGATGCCATTGATCTAATTGCTATGTGCAAGAGATTAAAAGATGAAAATCCAAATTTCAAGTATGAATTCAAGATAGACAGTAATAACAGGCTGGAGCATATTGCATGGTCTTACAGCTCATCTGTTCAATCGTACGAGTCATTTGGAGATGCTTTGGTTTTTGACACCACACACCGAGTAGATGCCTATGACATGCTGTTGGGAATTTGGCTTGGAGTGGACAATCATGGGATGACTTGTTTCTTTGGTTGCACACTTCTACGGGATGAAAATATGCAGTCTTTTTCATGGGCTTTAAAGGCTTTCATGGGCTTCATGAAAGGAAAAGCTCCGCAAACAATATTAACTGATCATAACATGTGGCTGAAAGAAGCTATTGCTGTTGAAATGCCAGAAACAAAACATGCCTTTTGTATATGGCATATTCTTTCTAAGTTGTCTGACTGGTTTTCTGTTCTACTTGGATCTCATTATGACGAGTGGAAAGCTGACTTCCTCCAGCTCTACAATTTGGAACTGATGGAAGATTTCGAAGAAGGGTGGAGACAAATGATTGATAAATATCGACTCCACACGAACAAACATATTATTAGCCTACATTCATTAAGGATGTTTTGGGCTCTACCATTCTTGAGGCGTTACTTCTTTGCAGGATTGACCAGCACAAGTCAATCCGAGTCCATTAATGCTTTCATCCAACGGTTCTTGAGCGCTCAATCTCAATTGGACCACTTTGTTGAGCAAGTAGCAGATATTGTTGATTTTAACGACCGGGCTGGATTGAAGCAAAAAATGCAACGGAAAGCGCAGAAAGTGTGCCTCAAAACAGGCTCGCCTGTCGAATCTCATGCTGCCACTGTCCTTACACCTTATGCCTTAAGTAAACTCCAGGATGAGCTAGTTTTGGCGCCGCAGTATGCATCCTTTCTGGTGGATGAAGGTTGCTTCCAGGTCAGACATCACACTCAGACGGACGGAGGCTGCAAAGTATTTTGGGTTCCTTGTCAAGCGCACATTACCTGCAGCTGCCACCTGTTTGAGTTTTCAGGAACCTTATGCAGACATGTTCTACGTGTCATGTCGACCAATAACTGTTTTCACATCCCTGACCAATACCTACCCACCCGTTGGAGAGGTGGTAGTTTGTCTTCTGTCAACCAGTTTCGGGGCGTAACAACAAGGGATCAGCCTGAAAGGATGCAATTTTTGGAATCCATGGTTTCGACGCTTATAATGGAATCCATTGAAACAGAGGAACGCCTTGATGTTGCTTGCGAGCAAATGTCTGTGGCGCTTTCACGTATCAAAGCCCTTCCAAGGCCGCCGGCACATGGGGTGAATGACATCACATATAGTTATTCGTCGGATTCATTGATCCTACCAGAGGTAGAAGATACTGATGGAATAATTCATGGTTTTGCAAACCCCCACGATAGTATTGCCTTAGGAAAGCTAAAGGAGAGAAGGGCGAGGGATGTCGTTGATGTCACGAGGAAGCGTAGGCAGTTTCCGGGGCCGTTGTGTGGGCAATATGTGCATGATCCTTCCGATTGCTCAATAATGGCAGGTGATAATCTAGGTGGAGATGGATTAGGGTATTTGTAG 2982 0.4252 MAEKNDGLVDVYFEHAVSTPEILEGNEIVVYVEGDLDKLRVLSDEPDNEPLLDKILNQTNIPTAPANDTPFSNNNEPMHNTSPPKSTEPTEPGANNPTPQKNNPTTTSNSNPSQATTAKPVSKTPLVTPKTKPISKANPNPKSNTTSSSKAKANLKNVSKPKPNLNSVSKPKVNPKPKITTKTYCTRSGSKVRKLKKKCETKKRDSRLKHAPAEALAKSKRKFINDDDALVVDDEECEVDLSFLEVPVTGDEGLDNALDPGTESDGANSWHSEEIKTPPPSEDEFSEEEPDDFANPSSFCHPPPILTCVSDLSQDEIGTIEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQVKPSDDGKMQRNRKSSRCGCQAYLRIVKKSDFDVPEWRVTGFSNVHNHELLKSNESFRNVERDNDAIDLIAMCKRLKDENPNFKYEFKIDSNNRLEHIAWSYSSSVQSYESFGDALVFDTTHRVDAYDMLLGIWLGVDNHGMTCFFGCTLLRDENMQSFSWALKAFMGFMKGKAPQTILTDHNMWLKEAIAVEMPETKHAFCIWHILSKLSDWFSVLLGSHYDEWKADFLQLYNLELMEDFEEGWRQMIDKYRLHTNKHIISLHSLRMFWALPFLRRYFFAGLTSTSQSESINAFIQRFLSAQSQLDHFVEQVADIVDFNDRAGLKQKMQRKAQKVCLKTGSPVESHAATVLTPYALSKLQDELVLAPQYASFLVDEGCFQVRHHTQTDGGCKVFWVPCQAHITCSCHLFEFSGTLCRHVLRVMSTNNCFHIPDQYLPTRWRGGSLSSVNQFRGVTTRDQPERMQFLESMVSTLIMESIETEERLDVACEQMSVALSRIKALPRPPAHGVNDITYSYSSDSLILPEVEDTDGIIHGFANPHDSIALGKLKERRARDVVDVTRKRRQFPGPLCGQYVHDPSDCSIMAGDNLGGDGLGYL 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01052 993 MobiDBLite consensus disorder prediction 48 213 - -
Aip04g01052 993 MobiDBLite consensus disorder prediction 189 204 - -
Aip04g01052 993 MobiDBLite consensus disorder prediction 53 188 - -
Aip04g01052 993 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 451 973 - -
Aip04g01052 993 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 310 450 - -
Aip04g01052 993 Pfam SWIM zinc finger 797 820 IPR007527 GO:0008270
Aip04g01052 993 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 451 973 IPR031052 GO:0006355
Aip04g01052 993 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 310 450 IPR031052 GO:0006355
Aip04g01052 993 MobiDBLite consensus disorder prediction 250 299 - -
Aip04g01052 993 Pfam MULE transposase domain 511 603 IPR018289 -
Aip04g01052 993 Pfam FAR1 DNA-binding domain 353 446 IPR004330 -
Aip04g01052 993 ProSiteProfiles Zinc finger SWIM-type profile. 790 823 IPR007527 GO:0008270
Aip04g01052 993 SMART 26again6 798 825 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01052 Aip-Chr4 15297948 15307257 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip04g01052 MULE 6.8e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01052 - - gmx:100778434 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01052 04 15297948 15307257 Aip04g01052 04 15297948 15307257 ECH