Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01050 ATGGGGAGAACACCATGCTGTGAGAAAGTTGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTGACCGATTATATCCAAGAGAATGGTGAAGGATCATGGAGGAACTTGCCCAAGAATGCAGGTTTGTTAAGGTGTGGAAAGAGTTGCAGGCTGAGGTGGATAAACTATTTGAGAGCAGATGTGAAGAGAGGGAACATCACTCCTCAAGAAGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAATAGGTGGTCAGTGATAGCAGGACATTTACCAGGAAGAACAGACAATGAGATAAAGAATTATTGGAACTCTCATCTGAGAAGAAAGATTTACTGTTTCATGAGATCACTCAATGAGTCTCTTCCTCCAATTGACATGGCTGCTCTTAATGAAGCTGCATCCAAGAGAAGAGCAGCACCTAGAAGATCATCAACAATTCAAGAAAACAACAACAATAATAATAAGACTTCATTGCCTAAAAGAGAAGCAATCACAACAAGTTCCCAAAATTGTTGCAACATTTTAGGAGATCATCATGATCATGATGATGATGATGGCAAGGGAATTTCAATGATGGATGCTTACTTCCAAATGGAGTTGGGGAACAACAATAATCCTGCTAGTAGCTTCATGAATAATAATAATAATAATGGAGATTTTGATGAGGGTTTATTGGGAGCATATGAATGGCCAGATGAAGAAATTATGAGACTTACTCAAATGTTTGAAAATGGGGTGCTTGTCAATAATAATAATAATAATAACAATATAGCCCTTAAAGAGGAGCCTAATGGAAATTATTATTATGATGATGATGAGTGTGGCCAAATGATGGATATGGATATGGATTTGGATATGGATGCAATTGGAGCAACAAGAACAACAAGTGAAGAAGAAGAAGAAGAGAGCAAGAATCATAAGAATAATAATAATATTGCTGCCTCCATTAGTGAACATAATTATTGGTACAACAACAATAACAATGATAATAGTTGTTCATCATCCTCAGTTGGTGACTATCATCAGTGGCATGATTGGGATTTGGCTCATCAATCCAATAATAATAATCATCATCATCAATGGGATCTTTCTACTGAAGATGATCAAATGCTGATGATGAATTCCTTGTGGGGTACCACCACCAATGAGGTTAATAATACTGCCTTTCATCATTATTATTAG 1200 0.3692 MGRTPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWRNLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMRSLNESLPPIDMAALNEAASKRRAAPRRSSTIQENNNNNNKTSLPKREAITTSSQNCCNILGDHHDHDDDDGKGISMMDAYFQMELGNNNNPASSFMNNNNNNGDFDEGLLGAYEWPDEEIMRLTQMFENGVLVNNNNNNNNIALKEEPNGNYYYDDDECGQMMDMDMDLDMDAIGATRTTSEEEEEESKNHKNNNNIAASISEHNYWYNNNNNDNSCSSSSVGDYHQWHDWDLAHQSNNNNHHHQWDLSTEDDQMLMMNSLWGTTTNEVNNTAFHHYY 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01050 399 Gene3D - 71 116 - -
Aip04g01050 399 CDD SANT 16 61 IPR001005 -
Aip04g01050 399 PANTHER MYB TRANSCRIPTION FACTOR 2 284 - -
Aip04g01050 399 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip04g01050 399 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aip04g01050 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip04g01050 399 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip04g01050 399 CDD SANT 71 112 IPR001005 -
Aip04g01050 399 SMART sant 13 63 IPR001005 -
Aip04g01050 399 SMART sant 66 114 IPR001005 -
Aip04g01050 399 MobiDBLite consensus disorder prediction 149 167 - -
Aip04g01050 399 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip04g01050 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip04g01050 399 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 284 - -
Aip04g01050 399 MobiDBLite consensus disorder prediction 138 167 - -
Aip04g01050 399 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip04g01050 399 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01050 Aip-Chr4 15257115 15261178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01050 1 244 MYB Transcription Factor Family AT5G49330 51.020 3.18e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip04g01050 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01050 K09422 - gmx:100819041 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01050 04 15257115 15261178 Aip04g01050 04 15257115 15261178 ECH