Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01042 ATGGGTGTGAGGAAGTGGCCCAATCGAAGCCTCTGTTCCTCACGATCTACACCGTTGTCATCATTGGAATCGTTGTTTCCTTCTTCTATGTCTTCTCTGCAATTTACTCTTCCAACAACTTGCTCTCTTCACCTTCCACTGTTTCTTCTTCCTTCTCTCAACCCGCTTCCATATCTTGCTCGCTATCCAGAAGCAGATGTTTTGATTTCAAGTGATCAGTTAATACCAACAGTTGTTGATGACAGTCTCGAAGCAGCTAAGGTTGAAGCCACAACATTTCAATATGGAGGCACTGAAGGAAAGCGTCACCAACTGCGAGAAGCCATGCTTTTCCATGATCCACCAGAATACTATAATCCTCCAGGTACTCAGTTGCTTTTGaggtcacttcccctcctccgttgccgtcacttcccattcctccgtcgccgccgCAGCAGAGAAAAGAACAACTCGAGCATGGCACAAACGCTACCAATGCCCGTAGCTCCCTCTCTCGCCCTAATCTCAAACCCTAGACCTCTTTCCAGAGCCGTCTATTTCCCTGTTCTCAACCCTCCCAAGGTGAGAGGGTTAAGCATAGAGTGCGCTCGAGTTGGCGGAGTGGAGATTCCGAACAACAAGAGAATCGAGTTCTCGCTACAGTACATCCATGGAATCGGAAGGAGCAGAGCTCGCAAGATTCTCTGCGATATAAGCATGGACAACAAGGTCACTAAGGATCTCAGCGAAGAGGAACTCATCACTCTTAGAGATGAAGTCTCCAAATACGTCATTGAAGGCGATTTGAGGAGGTTTAATGCGCTGAATATAAGGAGATTGAAGGAGATTCAATGTTACAGAGGAATAAGGCATATTCAGGGGCTTCCTTGCCGAGGACAACGTACGAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCTATTGCTGGCAAGAAGAAGAAGTAA 951 0.4353 MGVRKWPNRSLCSSRSTPLSSLESLFPSSMSSLQFTLPTTCSLHLPLFLLPSLNPLPYLARYPEADVLISSDQLIPTVVDDSLEAAKVEATTFQYGGTEGKRHQLREAMLFHDPPEYYNPPGTQLLLRSLPLLRCRHFPFLRRRRSREKNNSSMAQTLPMPVAPSLALISNPRPLSRAVYFPVLNPPKVRGLSIECARVGGVEIPNNKRIEFSLQYIHGIGRSRARKILCDISMDNKVTKDLSEEELITLRDEVSKYVIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01042 316 Hamap 30S ribosomal protein S13 [rpsM]. 196 312 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip04g01042 316 Gene3D 30s ribosomal protein s13, domain 2 266 316 IPR027437 -
Aip04g01042 316 ProSiteProfiles Ribosomal protein S13 family profile. 199 305 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip04g01042 316 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 142 315 - -
Aip04g01042 316 Pfam Ribosomal protein S13/S18 198 302 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip04g01042 316 Gene3D - 197 265 - -
Aip04g01042 316 TIGRFAM uS13_bact: ribosomal protein uS13 198 307 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip04g01042 316 ProSitePatterns Ribosomal protein S13 signature. 281 294 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip04g01042 316 SUPERFAMILY S13-like H2TH domain 197 308 IPR010979 GO:0003676
Aip04g01042 316 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 142 315 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01042 Aip-Chr4 15062390 15066541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01042 198 314 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 32.867 6.97e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01042 K02952 - tcc:18592264 254.218