Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01039 ATGATGATGGCGCAGCAACCAAGCTTAACGGGTCAACTTGTGGGTTCAGAGATACATGGCTTCCACACATTGCAAGACCTGGATGTTGAAAATACCATGGAGGAAGCAAAGAGCAGATGGCTTCGTCCCAATGAGATTCATGCTATACTCTCAAATTCCAAATATTTCACTATCCATGTCAAGCCAGTGAATAAGCCCAAAAGTGGTCGTATTATATTATTTGACCGCAAAATGCTTAGGAACTTTCGAAAAGATGGGTACAACTGGAAGAAGAAAAATGATGGGAAAACAGTTAAAGAAGCACATGAGCACTTAAAAGTTGGTAACGAAGAAAGGATACACGTATATTATGCACATGGCCAAGATAACCCAGGACTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAGGCTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACAAGAGTCACAAGTTTCTCCTGTCACACCTGTAAATTCTCATTCTAGTTCAGCCTCTGACCAACCATGGTTATCAGAAGAATTAGACTCTGGGACCAACACTGCTTATGCCAGTGGATTTAATGACAGTTTGACGGTTGAGAGTCATGAAATGAAGCTTCATGAGCTTAATACACTTGAATGGGATGACCTCGTGCTTTCAAACGACAACACCTCTACTATAGCCACTAGTGGAAATGTTCAATCCTTTAATCAACAAGACCAAAGTTTTCTGAAAGGGAGCTCTGGCAATGTAGCGAGCAATTTGGTTCCAGAAATTCATTCTTTCAGTAAGTTAGCTCAGCCAATTGCTGAGAGCAATAGTGTTCCTTATAGTATTCCGGATAGTGTTGATTTTCAGAGGACTTCTCCTATCTCTTTAGCTGGTGTTGATTCCTCGAACACTCTGGTAAATCCAAGCTTGCAAAGTCAGGACAGCTTTGGAATGTGGATAAACAATATGATATCTGATTCGCCACCTTGTTCTGTTGAGTCAGCTCTTGAATCCTCAATTTCTTCGTCGGTTCAGGGGCAATATTCATCACTGGTGGCTGGTAATCAGCTATCTTCTCTGCCTGAACAAGTATTTACTATCACTGATGTGTCCCCGACATGGGCTTCTTCCACCGAGAAAACTAAGATCCTTGTAACTGGTTTATTTCATAATGACTATCAACACCTTGCAAAGTCCAATCTATATTGTGTCTGCAGTGATGCAAGTATTCCTGTAGAAACTGTTCAGCTTGGAGTCTATCGATGCTGGGTATCGCCGCATTCTCCTGGATTTGTGAATCTCTACTTGAGCTTTGATGGCCGTAAACCAATTAGTCAAGTTGTTAACTTTGAGTATCGGACACCACTATTGCACGATCCTACTGCTTTTATGGAACAGAAATATGACTGGGAAGAATTTCGACTTCAAATTAGGCTTACTAATTTGCTCTTTGATACAAAAAAGAGCCTTGATATTTTCTCTAGTAAAGTGTCACCCAAGTCGCTGAAAGAGGCTAGGAAATTTGCCTTTAAAACATCTTTTATTTCTAAAAGCTGGCAATATCTGATGAAATCAACCGAGGAAAATACAATTCCGTTTCCACAAGCAAAAGATGACTTGTTTCAAATTGCTTTGAAAAACAGATTAAAGGAATGGCTTTTGGAACGAATCAGCTTAGGTGTTAAGACTACTGAACATGATAAACAAGGGCAAGGAGTAATCCATTTGTGTGCAATTCTGGGATATACTTGGGCTGTTTCTTTATTTTCATGGTCCGGCTTGTCTCTTGATTTCCGTGACAAATTTGGATGGACAGCTCTACACTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGGAACTCTTTTGTCTTTTGGGGCGAAGCCAAATTTGGTCACAGATCCAACTCCCCAAAATCCTGGTGGATGTACTGCTGCTGATCTTGCTTATATTAAGGGCTATGATGGGTTAGCGGCTTATCTTTCAGAAAAGTCTCTGGTCGAGCAAGTCAATGACATGAGCCTAGCCGGAAATATCAGTGGCCCACTGGAAACCACCACAGTGGATATAGGAAACACTGAGAACCTTACCGAGGACCAACTGTACCTCAAGGAGACACTGGCATCTTACCGCACTGCAGCTGAGGCAGCAGCACGGATACAATCTGCATTTAGGGAGCACTCTCTAAAATTGCGATCTATGGCAATTGAATCTTTAAGTCCAGAGGATCAACAACGCCAGATAGTGGCAGCAATGAAGATCCAGCATGCTTTCCGCAACTATGAGACAAGGAAAATGATGGCAGCTGCTGCTCGAATCCAACATAGATACCGTACATTTAAGTTGAGAAGAGAATTTCTCCACATGAAACGCCAGGTTATTAAAATTCAGGCTGCTTTCAGGGGATTTCAAGCCAGGAAGCAATATCGCAAAATTATTTGGTCTGTTGGAGTGCTTGAGAAAGTAATCCTGCGTTGGCGTTTGAAGAGAAAAGGTTTCCGTGGTCTCCAGGTCAATCCTGACCAAGAAATGAAAGATGAGACACAGGGAAGCGACATAGAGGAGGACTTCTTTAGGACTAGTAGGAAACAAGCTGAAGAACGTGTTGAGAGGTCTGTCGTGCGTGTACAAGCCATGTTCCGTTCTAAGAAGGCACAAGAAGAGTACAGAAGGATGAAGCTGGCACATAATCAAGCACAGCTGGAGCTTGAATTTGAAGAACTACTGATTTGTGGAGATGACATGATAACGGAGAAGCAGTAA 2742 0.4201 MMMAQQPSLTGQLVGSEIHGFHTLQDLDVENTMEEAKSRWLRPNEIHAILSNSKYFTIHVKPVNKPKSGRIILFDRKMLRNFRKDGYNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGLVRRCYWLLDKRLEHIVLVHYRETQESQVSPVTPVNSHSSSASDQPWLSEELDSGTNTAYASGFNDSLTVESHEMKLHELNTLEWDDLVLSNDNTSTIATSGNVQSFNQQDQSFLKGSSGNVASNLVPEIHSFSKLAQPIAESNSVPYSIPDSVDFQRTSPISLAGVDSSNTLVNPSLQSQDSFGMWINNMISDSPPCSVESALESSISSSVQGQYSSLVAGNQLSSLPEQVFTITDVSPTWASSTEKTKILVTGLFHNDYQHLAKSNLYCVCSDASIPVETVQLGVYRCWVSPHSPGFVNLYLSFDGRKPISQVVNFEYRTPLLHDPTAFMEQKYDWEEFRLQIRLTNLLFDTKKSLDIFSSKVSPKSLKEARKFAFKTSFISKSWQYLMKSTEENTIPFPQAKDDLFQIALKNRLKEWLLERISLGVKTTEHDKQGQGVIHLCAILGYTWAVSLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVGTLLSFGAKPNLVTDPTPQNPGGCTAADLAYIKGYDGLAAYLSEKSLVEQVNDMSLAGNISGPLETTTVDIGNTENLTEDQLYLKETLASYRTAAEAAARIQSAFREHSLKLRSMAIESLSPEDQQRQIVAAMKIQHAFRNYETRKMMAAAARIQHRYRTFKLRREFLHMKRQVIKIQAAFRGFQARKQYRKIIWSVGVLEKVILRWRLKRKGFRGLQVNPDQEMKDETQGSDIEEDFFRTSRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAHNQAQLELEFEELLICGDDMITEKQ 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01039 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 708 809 IPR027417 -
Aip04g01039 913 SMART CG_1_2 33 150 IPR005559 GO:0003677
Aip04g01039 913 SUPERFAMILY Ankyrin repeat 533 657 IPR036770 -
Aip04g01039 913 SUPERFAMILY E set domains 359 446 IPR014756 -
Aip04g01039 913 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Aip04g01039 913 SMART iq_5 739 761 IPR000048 GO:0005515
Aip04g01039 913 SMART iq_5 781 803 IPR000048 GO:0005515
Aip04g01039 913 SMART iq_5 861 883 IPR000048 GO:0005515
Aip04g01039 913 Gene3D - 526 665 IPR036770 -
Aip04g01039 913 Gene3D - 758 806 - -
Aip04g01039 913 ProSiteProfiles IQ motif profile. 782 806 IPR000048 GO:0005515
Aip04g01039 913 Coils Coil 875 895 - -
Aip04g01039 913 ProSiteProfiles IQ motif profile. 863 891 IPR000048 GO:0005515
Aip04g01039 913 Pfam Ankyrin repeats (3 copies) 540 624 IPR002110 GO:0005515
Aip04g01039 913 SMART ANK_2a 595 624 IPR002110 GO:0005515
Aip04g01039 913 SMART ANK_2a 634 665 IPR002110 GO:0005515
Aip04g01039 913 ProSiteProfiles Ankyrin repeat profile. 595 627 IPR002110 GO:0005515
Aip04g01039 913 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 18 908 - -
Aip04g01039 913 ProSiteProfiles Ankyrin repeat region circular profile. 595 623 - -
Aip04g01039 913 ProSiteProfiles IQ motif profile. 759 788 IPR000048 GO:0005515
Aip04g01039 913 ProSiteProfiles IQ motif profile. 740 769 IPR000048 GO:0005515
Aip04g01039 913 Pfam IQ calmodulin-binding motif 786 803 IPR000048 GO:0005515
Aip04g01039 913 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Aip04g01039 913 Gene3D Immunoglobulins 354 448 IPR013783 -
Aip04g01039 913 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 18 908 - -
Aip04g01039 913 MobiDBLite consensus disorder prediction 152 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01039 Aip-Chr4 14947866 14955025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01039 33 895 CAMTA Transcription Factor Family AT3G16940 55.390 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Aip04g01039 Ank_2 1.2e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01039 K21596 - gmx:100819198 1337.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01039 04 14947866 14955025 Aip04g01039 04 14947866 14955025 ECH
Aip01g02881 01 130811640 130818099 Aip04g01039 04 14947866 14955025 PCT