Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01024 ATGGAAAATTTGAGTCCTTTCAATGAGTTCGGTTTTAGTGCAATTGAGGATAAACATAGTTCATCAAATTATACTTCTTGGGCTATAGAGGGAATGAATGAAGTGAACAAGGTTCAATTTTCTGGTGCTGAAGAGTGGGGTGAGTCAATGGGAATTGACCCTTTTGGGTCTAGTTTTGAATTCTTTCCTTCACAGCAGCAGCAGCAACAACAATTATCATATCTTGAGTATGGAACATTGGAGAGTCTACAATTTGTTGCAGTTTCTCCACCACCACAAACCCATACATACTTTGATGACCTCCACATGTTTGATGAAAATCCAACAAGAATGGTTCCACTAAGTGAAGAAACTATTGCAAACGACAAACAGCAAAACTCATCAACTCCTTTAGCATCACTTGAGTTATTGAAGAGCTATGGCAGCAACAAAGGATTTAAGAAGTTATGTGATGAAGAGAAAATCATGCAACCAATTGATCACTCTGCTGCAGGTAATGAAGTTCTTGGAAGAAAGCTTTCAACTGACGATGTGATGAGGATAGCAGGAACAAGGTTCATTCAATCATCACCATCATCACCAAAATCTTTAGGATCATCAGCTTTGAAGTCAATTTTTAGCCACCCTTTTGGTCAATTTTTCTCAGGACTCTCTGATGAGGAGAAAGAGGAGGTTCAACTTGCTGAATCACTCTTGGCTTGTGCTGAGAAAGTGGGGTTTAAGCAGTTCGGGCGAGCCGGCAAGTTGCTATCTCAATGCGAGTCATCGTCTTCCAAGACCGGTTCACCAGTTAAGCGAGTTGTTCATTACTTCGCGGAGGCTCTTCGCCTCAGGATTGATCTTGAGACGGGAAGAATTTCATCCAAGGACTTGAAAAAGATGCAACCAATGGATCCTCGAGAGATAACCAAGAATCTCACCCCCTCTGTTTTGGCATTTTATGAAGCAGCTCCTTTCTGTCAGATCACAATGTTCACACTAGTCCAATCTATAATTGAAAATGTTACTGAGGCAAAGAAGATTCACGTCATTGATTTTGAAATCAGAAAGGGTGTGCAATGGACAACCCTGATGCAATCCCTTGTGTCAAGAAATCGATGTCCTTTAGAGCTGCTTAAGATAACAGCTGTTGGAAGTGGAAGCAATTCGAAGCTTATCATAGAGGACACTGGAAAGAGGTTGAAGGATTTTGCAATAAGCTTGAAGATAAACCTTTGCTATGATTATGTTATTGTACCTGACATGCTGCAACTCAGAGAGGATCTATTTAAGATAGATCCTGAGGAAACAATTGTGGTTTACTCTCAGTATGCACTTGGCAGCAAGATTCAGCAGCCGGACCAGCTCGAAACTATCATGAGAGTTGTCAAAACAATAAGGCCTACTGTACTTGCCATAACTGAAATTGAGGCGAGCCACAATTCGACTTCATTTGTAAACCGGTTCATTGAGGCGCTTTTCTACTTCAGTGCATTGTTTGATTGTTTAGAGAATTGTATGAAGCATGACGAGCCGAACAGGCTGGTTTTCGAGTCGCAGTACCTTGATTATGGAATCAAGAACATATTGGCTGCCGAGGGAGCAGAGAGGAATGCTAGGAATGTGAGGATTGATGTATGGAGGGCATTTTTCTCCCGGTTTGGACTGGTGGAAGCAGAGATTAGCATGTTATCTTTGTTCCAAGCTGAGCTTGTTGCTAAAAGGTTCCCTTGTGGAAGCAGTTGTACATTTGATTGGGATGGGAATTCCCTTCTTTTGGGGTGGAAGGGAACACCATTGAACTCTATTTCCGTGTGGAAGTTCCTATGA 1809 0.4174 MENLSPFNEFGFSAIEDKHSSSNYTSWAIEGMNEVNKVQFSGAEEWGESMGIDPFGSSFEFFPSQQQQQQQLSYLEYGTLESLQFVAVSPPPQTHTYFDDLHMFDENPTRMVPLSEETIANDKQQNSSTPLASLELLKSYGSNKGFKKLCDEEKIMQPIDHSAAGNEVLGRKLSTDDVMRIAGTRFIQSSPSSPKSLGSSALKSIFSHPFGQFFSGLSDEEKEEVQLAESLLACAEKVGFKQFGRAGKLLSQCESSSSKTGSPVKRVVHYFAEALRLRIDLETGRISSKDLKKMQPMDPREITKNLTPSVLAFYEAAPFCQITMFTLVQSIIENVTEAKKIHVIDFEIRKGVQWTTLMQSLVSRNRCPLELLKITAVGSGSNSKLIIEDTGKRLKDFAISLKINLCYDYVIVPDMLQLREDLFKIDPEETIVVYSQYALGSKIQQPDQLETIMRVVKTIRPTVLAITEIEASHNSTSFVNRFIEALFYFSALFDCLENCMKHDEPNRLVFESQYLDYGIKNILAAEGAERNARNVRIDVWRAFFSRFGLVEAEISMLSLFQAELVAKRFPCGSSCTFDWDGNSLLLGWKGTPLNSISVWKFL 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01024 602 ProSiteProfiles GRAS family profile. 218 600 IPR005202 -
Aip04g01024 602 Pfam GRAS domain family 228 600 IPR005202 -
Aip04g01024 602 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 56 600 IPR005202 -
Aip04g01024 602 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 56 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01024 Aip-Chr4 14670549 14672496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01024 221 601 GRAS Transcription Factor Family AT5G17490 30.990 9.84e-51 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip04g01024 GRAS 3.5e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01024 - - adu:107483434 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01024 04 14670549 14672496 Aip04g01024 04 14670549 14672496 ECH