LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip04g01011	ATGGAGTCAACTACCCCCTTCTTCTCCATCATCACGATCCTTATCTTCTACTCCTTAGTCTCACTCTCAGCTTCTTCAAATCCAAACAATCCATTCCCAAAAGAAGCTCTTCCTACTAAATCTGGTTACCTCCCAGTCAGTACATCATCTTCCTCTGCTATCTTCTATGCTTTCTATGAAGCTCATAACTCAACTTTACCTCTCTCCCAAACCCCTCTTCTCATTTGGCTCCAAGGTGGCCCCGGATGCTCCTCCATGATTGGCAACTTCTATGAGCTTGGACCATGGACTCTCACTGATGAATCACCCCTTACACTTCACCCAAACCCTGGTGCTTGGAACAGGATCTTTGGCCTCCTCTTTCTTGATAACCCCATTGGTTCTGGATTCAGTGTGGCAGCAACAACACAAGAAATCCCAACTGATCAAAATGGTGTTGCAAAGCATCTCTTTGCTGCTATAACAAGGTTTGTTGAGCTTGATCCTGTTTTCAAGAACCGTCCTATTTATATTACTGGTGAAAGTTATGCTGGAAAGTATGTTCCTGCTATTGGATACTATATATTGAAGGAGAATTCACGGCTGCGCGGTTCTAAGAGAGTGAATTTGGCTGGTTTGGCTATTGGAGATGGGTTGACTGACCCTGTTACACAAGTGGTTACTCATGCTGTTAATGCTTATTATATTGGTTTGATCAATGAGAGGCAGAGGAATGAGTTGGAGAAGGATCAATTGGAAGCAGTTAGGTTAGCGCAGATTGGGAATTGGAGCGCTGCAACTGATGCAAGGAATGTGGTTTTGCGAAAGTTGAGGAATGTAACAGGGTTGGCTACTTTGTTTGATTACACAAGGAAAAAGCCCTATGGCGATGATGTAGTTGATAAATTCTTGAACAATGTCGAAGCTAAGAAGGCCTTAGGGGTGAAGAATGAGTCACTTGTGTTTGAAGGATGCAGCGATGTGGTTGGCGCCGTGTTACATGCTGATGTGATGAAGAGTGTGAAGTACATGGTAGAGGAATTGGTGAGGAACACTAGGGTGTTGTTATATCAAGGTCAGCATGATATTCAGGATGGAGTGGTTCAGGTCGAGGCGTGGGTGAAGACGAAGAAGTGGGAAGAGATTGAGGATTTTTTGAATGCAGAGAGGAAGATATGGAAGGTGAACGGAGAGCTTGCTGGCTATGTCCAACAATGGAAGTCACTCACTAATGTTGTGGTGTTAGGGGCAGGGCATCTTTTACCTTCTGATCAACCTGTGACATCTCAAGCAATGATTGAAGATTGGGTCCTTGAAAAAGAAAATCAGAAGGCAGCGAGGTGGAAGGAGGAGGCGACGATTAAACAGGAGGTGAGGTGGAAGGCGCAAACGAATAAGAACAGAGTATTACCGGCGGCGAGTAATGGCGACGAAGGAGGAGGCGAGCTTGGCGACAACGATGGAGGAGGCGAGCTCGGCGACGACGATGGAGGAGGCAAGCTCGATGACGATGAACGAGGAGGGGAGCTCGGCGACGACGAAGAGGGGCTGTGGGACGGCGAAGAGGGGCTGTGGGATGTGGGATGCGGTGGCGATGGCGGTGGGATGCAGTGGCGATGGTGGTGGCTATGCGACAGCGAAGAGGGGCTGCTCGATTGTGGCCCGTGGGTGCTTTCTCTTCTGCCCGTGGTGGCTATGCTGTGCTTTCTCTTCACAGAAAATCAGAAGGCAGCGAGGTGGAAGGAGGAGGCGACGATTAAACAGGAGGTGAGGTGGAAGGCGCAAACGAATAAGAACAGAGTATTACCGGCGGCGAGTAATGGCGACGAAGGAGGAGGCGAGCTTGGCGACAACGATGGAGGAGGCGAGCTCGGCGACGACGATGGAGGAGGCAAGCTCGATGACGATGAACGAGGAGGGGAGCTCGGCGACGACGAAGAGGGGCTGTGGGACGGCGAAGAGGGGCTGTGGGATGTGGGATGCGGTGGCGATGGCGGTGGGATGCAGTGGCGATGGTGGTGGCTATGCGACAGCGAAGAGGGGCTGCTCGATTGTGGCCCGTGGGTGCTTTCTCTTCTGCCCGTGGTGGCTATGCTGTGCTTTCTCTTGTGA	2091	0.5036	MESTTPFFSIITILIFYSLVSLSASSNPNNPFPKEALPTKSGYLPVSTSSSSAIFYAFYEAHNSTLPLSQTPLLIWLQGGPGCSSMIGNFYELGPWTLTDESPLTLHPNPGAWNRIFGLLFLDNPIGSGFSVAATTQEIPTDQNGVAKHLFAAITRFVELDPVFKNRPIYITGESYAGKYVPAIGYYILKENSRLRGSKRVNLAGLAIGDGLTDPVTQVVTHAVNAYYIGLINERQRNELEKDQLEAVRLAQIGNWSAATDARNVVLRKLRNVTGLATLFDYTRKKPYGDDVVDKFLNNVEAKKALGVKNESLVFEGCSDVVGAVLHADVMKSVKYMVEELVRNTRVLLYQGQHDIQDGVVQVEAWVKTKKWEEIEDFLNAERKIWKVNGELAGYVQQWKSLTNVVVLGAGHLLPSDQPVTSQAMIEDWVLEKENQKAARWKEEATIKQEVRWKAQTNKNRVLPAASNGDEGGGELGDNDGGGELGDDDGGGKLDDDERGGELGDDEEGLWDGEEGLWDVGCGGDGGGMQWRWWWLCDSEEGLLDCGPWVLSLLPVVAMLCFLFTENQKAARWKEEATIKQEVRWKAQTNKNRVLPAASNGDEGGGELGDNDGGGELGDDDGGGKLDDDERGGELGDDEEGLWDGEEGLWDVGCGGDGGGMQWRWWWLCDSEEGLLDCGPWVLSLLPVVAMLCFLL	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip04g01011	696	Gene3D	alpha/beta hydrolase	18	444	IPR029058	-
	Aip04g01011	696	Pfam	Serine carboxypeptidase	36	430	IPR001563	GO:0004185\|GO:0006508
	Aip04g01011	696	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	20	438	IPR001563	GO:0004185\|GO:0006508
	Aip04g01011	696	ProSitePatterns	Serine carboxypeptidases, serine active site.	171	178	IPR018202	GO:0004185
	Aip04g01011	696	MobiDBLite	consensus disorder prediction	591	645	-	-
	Aip04g01011	696	MobiDBLite	consensus disorder prediction	500	514	-	-
	Aip04g01011	696	PRINTS	Carboxypeptidase C serine protease (S10) family signature	122	132	IPR001563	GO:0004185\|GO:0006508
	Aip04g01011	696	PRINTS	Carboxypeptidase C serine protease (S10) family signature	109	121	IPR001563	GO:0004185\|GO:0006508
	Aip04g01011	696	PRINTS	Carboxypeptidase C serine protease (S10) family signature	157	182	IPR001563	GO:0004185\|GO:0006508
	Aip04g01011	696	PRINTS	Carboxypeptidase C serine protease (S10) family signature	402	415	IPR001563	GO:0004185\|GO:0006508
	Aip04g01011	696	MobiDBLite	consensus disorder prediction	459	517	-	-
	Aip04g01011	696	PANTHER	CARBOXYPEPTIDASE	20	438	-	-
	Aip04g01011	696	SUPERFAMILY	alpha/beta-Hydrolases	38	430	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip04g01011	Aip-Chr4	14316037	14324144	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip04g01011	329	430	Calmodulin-binding Proteins	AT2G22960	26.214	8.29e-09	53.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip04g01011	K09645		-	gmx:102663282	671.774