Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01000 ATGGCCTCAGCAAGCAGAGCAACAAACAGAGTTCCCCACCACCAACACCAACACCAACAGCAACAACAACACCCCACAGCATCTTCATCAAAACGCACTGTCGTACACAACACGAACGACGCGTCAATAAGCAAGGCCATAGCGCAGTACACAGAAGACGCCCGCCTCCACGCCGTTTTCGAGCAGTCCGGCGAGTCCGGCAAGTCTTTCGACTACTCCCACTCCGTCCGCCACACCTCCGAGTCCGTACCGGAGCACCAGATCACAGCTTACCTACTGAAGATCCAGCGTGGCGGCCTCATCCAGCCTTTCGGCTGTATGATTGCCGTCGACGAGCCGTCCTTCCGCATCCTCGGATACTCCGAGAACGCTCGGGACATGCTCGGCATATCACCGCAGTCAGTCCCAACTCTCGAGCGTCTCCCCGGATCCCACGAGGAGGCGCTCACAATTGGTACTGACGTGCGCAGTCTTTTCACCCCCTCCAGCAGCACCTTGCTAGAGAGGGCGTTTGGGGCGCGCGAGATCACGCTCCTCAACCCAATTTGGATCCATTCCCGGAATTCCGGCAAGCCTTTTTATGGAATCTTGCACCGAATCGATGTTGGAATCGTCATCGATTTGGAGCCTGCTAGGACTGAGGACCCTGCACTGTCAATTGCAGGGGCTGTTCAGTCCCAGAAGCTAGCTGTTCGAGCTATTTCGCAGCTTCAGTCGCTTCCCGGAGGCGATGTGAAGCTTCTTTGTGACACTGTTGTGGAGAGTGTGAGAGAATTGACCGGTTATGATAGGGTGATGGTGTACAAATTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGCCTGATTTGGAGCCTTATATTGGTTTGCATTACCCTGCTACTGATATACCTCAGGCTTCGAGGTTCTTGTTCAAGCAGAATAGAGTTAGGATGATTGTAGATTGCAATGCTTCGCCATTGAGGGTGGTGCAGGATGAGGCCCTTGTGCAGCCCTTGTGTTTGGTTGGCTCCACCCTGCGTGCACCACACGGTTGCCACGCTCAGTATATGGCGAATATGGGGTCGATTGCTTCGCTGGTTATGGCGGTTATCATCAATGCTAATGATGAGGAAGCTGTTGGCGGCCGCAGCTCAATGAGGCTGTGGGGATTGGTTGTTTGCCACCACACTTCGGCCAGGTGTATACCTTTTCCCTTGAGGTATGCTTGTGAATTCTTGATGCAGGCCTTTGGGCTGCAGCTGAATATGGAGCTTCAATTGGCTTCTCAGTCATTAGAGAAGCGAGTTTTGAGGACGCAAACTCTGTTGTGTGACATGCTTCTTAGGGACTCGCCCACTGGCATTGTTACTCAGAGTCCTAGTATTATGGATTTGGTGCGGTGTGATGGAGCAGCTTTGTACTACAAAGGAAACTACTATCCATTGGGTGTAACACCTACTGAATCTCAAATAAGGGATATTATAGAGTGGTTGTTGGCATACCATGGAGATTCGACGGGTTTGAGTACTGATAGTCTGGGTGATGCTGGGTATCCTGGTGCTGCCTCGCTTGGGGATGCTGTTTGTGGGATGGCTGTTGCATATATCACTGAAGGGGATTTTCTTTTCTGGTTTAGGTCTCACACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCTGAGGATAAGGATGATGGGCAGAGAATGCATCCTCGTTCTTCATTTAAGGCATTTTTGGAAGTGGTGAAAAGCCGGAGTTTGCCATGGGATAATGCAGAAATGGATGCGATTCACTCTTTGCAGCTTATTCTGCGAGACTCATTTAGAGATGCCGAGCATAGCAACTCAAAGGCTGTTATGCATTCGCATCTGGCGGATTTTGAGTTGCAAGGGGTAGATGAGCTAAGTTCTGTGGCGAGAGAAATGGTCAGATTGATAGAAACTGCCACTGCTCCCATATTCGCTGTTGACGTTGATGGCCGCATAAATGGGTGGAATGCAAAGGTTGCAGAATTGACAGGGCTTCCAGTCGACGAGGCTATGGGGAAGTCACTGGTTCATGATCTTGTGTACAAGGAGTTCGAAGAAACTGTAGACAAGCTTCTCTCTCGCGCTCTAAGAGGTGAAGAAGATAAGAATGTTGAGATAAAATTGAAGACATTTGGCCCAGAAAATCAAAATGGTGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTATGCTTTGTTGGTCAGGACGTTACTGGTCAGAAGGTTGTAATGGACAAATTCATCAACATACAAGGTGACTACAAGGCTATTGTACATAGCCCAAATCCATTGATCCCCCCAATTTTTGCATCGGATGATAACACTTGTTGCTTAGAGTGGAATGCAGCCATGGAAAAGCTTACTGGTTGGGGGCGTGCAGATGTAATTGGAAAGATGTTGGTTGGAGAGGTTTTCGGTAGTTGCTGTCAGTTAAAGGGCTCGGATGCTTTAACAAAGTTCATGATTGTGTTGCACAATTCCCTTGGTGGACAAGATACCGACAAGTTCCCTTTTTCATTTCTTGACCGGCATGGAAAATATGTGCAAGCTTTCTTGACAGCAAATAAGAGGGTTAACATGGATGGTCAGATTATTGGAGCTTTTTGCTTTTTGCAAATTGCGAGTCCTGATCTTCAACAGGCTCTGAAAATACAGAAGCAACAAGAGAAGAATTGCTATGCTAGGATGAAAGAGTTAGCCTATATTTGTCAAGAAATAAAGAATCCACTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGCTACTGGATTGACCGATGAACAAAAGCAGTTTCTTGAGACTAGTACTGCATGTGAGAAGCAAATGTCAAAAATAATACAGGATGTTGACTTGGCAAGCATTGAAGATGGATCAATGGAGCTTGAAAAGGGAGAATTCTTGCTTGGAAACGTCATCAATGCTGTTGTTAGCCAAGTAATGTTATTACTAAGAGAGAGAAATTTACAGTTGATTCGTGATATACCTGAAGAAATCAAGACGTTGGCTGTTTATGGTGATCAGTTGAGGATTCAACAAGTCTTGGCTGATTTCTTATTGAATATGGTGCGCTATGCGCCTTCTCCAGATGGGTGGGTAGAGATTCATGTACATCCAAGAATAAAACAAATCTCCGACGGGCTTACTCTTCTCCGTGCTGAATTTAGGATGGTATGTCCTGGTGAAGGTGTTCCTCCTGAATTGGTTCAAGACATGTTCCATAGCAGTCGTTGGGTGACTCAAGAAGGCTTAGGTCTGAGCATGAGCCGGAAGATTCTAAAGTTAATGAATGGTGAAGTCCAATATATCAGGGAGGCAGAAAGATGCTATTTCTTCGTTCTTCTTGAACTACCTGTAACACGGAGAACTTACTCTAAAATCGTTAACTAG 3444 0.4681 MASASRATNRVPHHQHQHQQQQQHPTASSSKRTVVHNTNDASISKAIAQYTEDARLHAVFEQSGESGKSFDYSHSVRHTSESVPEHQITAYLLKIQRGGLIQPFGCMIAVDEPSFRILGYSENARDMLGISPQSVPTLERLPGSHEEALTIGTDVRSLFTPSSSTLLERAFGAREITLLNPIWIHSRNSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPLRVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINANDEEAVGGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVRCDGAALYYKGNYYPLGVTPTESQIRDIIEWLLAYHGDSTGLSTDSLGDAGYPGAASLGDAVCGMAVAYITEGDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLILRDSFRDAEHSNSKAVMHSHLADFELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVAELTGLPVDEAMGKSLVHDLVYKEFEETVDKLLSRALRGEEDKNVEIKLKTFGPENQNGAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNAAMEKLTGWGRADVIGKMLVGEVFGSCCQLKGSDALTKFMIVLHNSLGGQDTDKFPFSFLDRHGKYVQAFLTANKRVNMDGQIIGAFCFLQIASPDLQQALKIQKQQEKNCYARMKELAYICQEIKNPLSGIRFTNSLLEATGLTDEQKQFLETSTACEKQMSKIIQDVDLASIEDGSMELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVHPRIKQISDGLTLLRAEFRMVCPGEGVPPELVQDMFHSSRWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFFVLLELPVTRRTYSKIVN 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01000 1147 Gene3D PAS domain 94 347 - -
Aip04g01000 1147 SMART gaf_1 244 432 IPR003018 GO:0005515
Aip04g01000 1147 Pfam GAF domain 245 422 IPR003018 GO:0005515
Aip04g01000 1147 PANTHER TWO-COMPONENT HISTIDINE KINASE 15 1140 - -
Aip04g01000 1147 PANTHER PHYTOCHROME 15 1140 - -
Aip04g01000 1147 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 244 412 IPR016132 -
Aip04g01000 1147 Pfam Phytochrome region 435 608 IPR013515 GO:0006355|GO:0009584
Aip04g01000 1147 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 987 1135 IPR036890 -
Aip04g01000 1147 SUPERFAMILY PYP-like sensor domain (PAS domain) 644 752 IPR035965 -
Aip04g01000 1147 Gene3D - 976 1141 IPR036890 -
Aip04g01000 1147 Gene3D - 225 583 IPR029016 -
Aip04g01000 1147 SUPERFAMILY GAF domain-like 224 419 - -
Aip04g01000 1147 SMART HKATPase_4 1024 1139 IPR003594 -
Aip04g01000 1147 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1024 1131 IPR003594 -
Aip04g01000 1147 SUPERFAMILY PYP-like sensor domain (PAS domain) 95 214 IPR035965 -
Aip04g01000 1147 ProSiteProfiles PAS repeat profile. 771 823 IPR000014 -
Aip04g01000 1147 CDD PAS 782 890 IPR000014 -
Aip04g01000 1147 SMART pas_2 94 160 IPR000014 -
Aip04g01000 1147 SMART pas_2 770 840 IPR000014 -
Aip04g01000 1147 SMART pas_2 639 706 IPR000014 -
Aip04g01000 1147 Pfam PAS fold 90 211 IPR013654 GO:0006355
Aip04g01000 1147 Gene3D - 893 975 - -
Aip04g01000 1147 Pfam PAS fold 640 755 IPR013767 GO:0006355
Aip04g01000 1147 Pfam PAS fold 771 890 IPR013767 GO:0006355
Aip04g01000 1147 ProSitePatterns Phytochrome chromophore attachment site signature. 344 353 IPR013516 -
Aip04g01000 1147 Gene3D PAS domain 784 892 - -
Aip04g01000 1147 SMART HisKA_10 912 976 IPR003661 GO:0000155|GO:0007165
Aip04g01000 1147 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 903 974 IPR036097 GO:0000155|GO:0007165
Aip04g01000 1147 CDD HisKA 912 972 IPR003661 GO:0000155|GO:0007165
Aip04g01000 1147 TIGRFAM sensory_box: PAS domain S-box protein 644 759 IPR000014 -
Aip04g01000 1147 Gene3D - 427 600 IPR043150 -
Aip04g01000 1147 SUPERFAMILY PYP-like sensor domain (PAS domain) 785 888 IPR035965 -
Aip04g01000 1147 CDD PAS 648 755 IPR000014 -
Aip04g01000 1147 PRINTS Phytochrome signature 159 181 IPR001294 GO:0006355|GO:0009584
Aip04g01000 1147 PRINTS Phytochrome signature 259 278 IPR001294 GO:0006355|GO:0009584
Aip04g01000 1147 PRINTS Phytochrome signature 344 365 IPR001294 GO:0006355|GO:0009584
Aip04g01000 1147 PRINTS Phytochrome signature 452 472 IPR001294 GO:0006355|GO:0009584
Aip04g01000 1147 PRINTS Phytochrome signature 537 556 IPR001294 GO:0006355|GO:0009584
Aip04g01000 1147 PRINTS Phytochrome signature 570 588 IPR001294 GO:0006355|GO:0009584
Aip04g01000 1147 PRINTS Phytochrome signature 640 656 IPR001294 GO:0006355|GO:0009584
Aip04g01000 1147 PRINTS Phytochrome signature 659 674 IPR001294 GO:0006355|GO:0009584
Aip04g01000 1147 PRINTS Phytochrome signature 733 750 IPR001294 GO:0006355|GO:0009584
Aip04g01000 1147 PRINTS Phytochrome signature 753 773 IPR001294 GO:0006355|GO:0009584
Aip04g01000 1147 Gene3D PAS domain 632 765 - -
Aip04g01000 1147 PIRSF Phytochrome_conventional 20 1144 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Aip04g01000 1147 CDD HATPase_Phy-like 1023 1135 IPR044767 -
Aip04g01000 1147 Pfam His Kinase A (phospho-acceptor) domain 916 976 IPR003661 GO:0000155|GO:0007165
Aip04g01000 1147 ProSiteProfiles PAS repeat profile. 637 708 IPR000014 -
Aip04g01000 1147 ProSiteProfiles Histidine kinase domain profile. 919 1139 IPR005467 -
Aip04g01000 1147 MobiDBLite consensus disorder prediction 1 34 - -
Aip04g01000 1147 SUPERFAMILY GAF domain-like 430 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01000 Aip-Chr4 14166435 14172244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01000 3 1137 Histidine Kinase Gene Family AT4G16250 74.455 0.0 1771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01000 K12121 - gmx:100799831 2009.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01000 04 14166435 14172244 Aip04g01000 04 14166435 14172244 ECH