Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00999 ATGGGAACTTCAGAAGCAAAAGAAGAAGAGCTTGTGAAGAAGATAGAGAAGCTTGAAGCTGGCCATGTTCAGCTGAAGCATGAGATGTCGAAGCTGAAGCTATCTGAACGCCGCCATCATCACCGCCACAGGTCGCACTCCTTGTCGCCGCAGCGTTCAAGGCTTGGCGGTTGTGGCGGTGGCGGGGTTGCTGCTGCTGGTTGTAACAACAAAGGGTCTTCTTCTTCACCCTTGAAGAGGGAGAGTCGCAGCAGCAATAATCATAATCATAATCACAATCAGAACCAGAATCAGAATGAAAATGGTGATGGTGATGGTGATGGTGATGGTGATGTTGGTGTGAATGTTGGCCTTAGTGAGAAGCAGTATATGAACATTTTGCAGTCAATGGGGCACTCGCTTCATATTCTGGATCTTCAATGCCGGATTATATATTGGAATCCTAGTGCCGAAAATCTGTATGGTTATGCAGCAGTAGAGGCTCTTGGAAAAGATGGGATTGAGCTGCTCGTAGACCCTATTGATTTCGGACTAGCATATGATGTATTCAACCATGTCACTGTGGGGGAGAGTTGGAGCGGCCAGTTCCCTGTCAAGAACAAGATGGGGGAGAAATTTTCAGTTGTGGCAACCAACACGCCATTCTATGATGACGATAGGAAGTTGATTGGGGTTATCAGTGTGTCCATTGATTCTAGACCCTTTCTTGAAACTCGAGCTACTTTATCGGATGTGAAGAATGCTGCACCAGGTTCAGACTTGGATTATAACCGCGCGAAGAGTGGCATTTCAAATAAACTTGGCCTTGACTCTCAGCAGCCACTTCAAGTTGCTCTAGCATCCAAAATTTCTAATTTGGCATCAAAGGTGAGTAATAAAGTTAAGTCAAGAATGCGGACAGGAGAAAACGGTGTTGACCGTGATGGTTGGAGCGGAGAAAGTCATCATTCTGATCAGAGTTTTTCGGATTGTGTTTTTTCTGACCAGAAAGAGGATGGTAATTCCAGTGGAGCTAGCACTCCCAGAGGTGATGTACCACCTCCATTTGGTGTATTTTGTCATGTTGAAGAGAAATCACCAGCTAAATCTTCGAGAGACTCTGGTGATGATGGCGAAGGAAAACCAATTCACAAGATCATAACTTCTAAAGCTGAAGCGTGGATTCAAAAGAGAACATTGTCATGGCCATGGAGAGGAAATGGTCAAGCTGGATCCGAGGCAAGAAATGTTTCTGTTGCTAGGCCACTGGTGCAGAATGATCAAGAAAATGAACTGGTTAATCAGATGAATCTTTCTTCCGAGTCCAGGATGGAAGTCCAGTCAGGTAATCGGCCTGTTAACAACGAGGCTTCAGGATCGTGGTCCTCAGTTAACGTTAACAGTACTAGCAGTACCAGCAGCTGCGGCAGTGGCAGCAGTGGTGCTGTCAATAATAAAGTGGATATTGATACCGATTGCTTGGATTATGAAATCTTGTGGGAGGACCTCACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCCCTGTGGTATGGATCAGATGTTGCGGTCAAAGTATTCTCAAAGCAAGAATATTCAGAGGATGTGATACTATCCTTCAGACAAGAGGTATCTGTCTTGAAAAGACTTCGCCATCCAAATATTATTCTCTTCATGGGGGCAGTGACTTCACCTCAACGTCTCTGCATTGTGACAGAGTTTCTCCCACGTGGAAGCTTGTTTCGTTTGCTCCAAAGAAATACATCCAAACTTGACTGGAGACGGCGAGTTCATATGGCTTTAGATATCGCACGTGGTGTGAATTATCTTCATCGTTGCAGCCCCCCTATTGTTCATCGAGATTTGAAGTCTTCAAATCTCCTAGTTGACAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGCCTTAAGCATGAAACATATCTCACAACCAAAACAGGAAAGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGAAATGAACCCTCGGATGAGAAGTCCGATGTGTACAGCTTTGGGGTGATATTGTGGGAACTTGCAACTGAAAAGATCCCGTGGGATACTCTCAATGCAATGCAGGTTATTGGCGCTGTAGGGTTTATGAACCATCAGTTAGAAATTCCGGCAGATGTTGATCCGCAGTGGGCTTCTATAATGGAGAGCTGCTGGCATAGCGATCCGGCTCAGCGACCAACATTCCAGGAACTTGTGGAAAGGCTCAGAGAAATGCAGAGACGACATGCCATTCAGCTCCAGGCGGCTCGTTCTGCCAGCGGTGGAAGCAATCAGAAGGAATCTTAA 2325 0.4559 MGTSEAKEEELVKKIEKLEAGHVQLKHEMSKLKLSERRHHHRHRSHSLSPQRSRLGGCGGGGVAAAGCNNKGSSSSPLKRESRSSNNHNHNHNQNQNQNENGDGDGDGDGDVGVNVGLSEKQYMNILQSMGHSLHILDLQCRIIYWNPSAENLYGYAAVEALGKDGIELLVDPIDFGLAYDVFNHVTVGESWSGQFPVKNKMGEKFSVVATNTPFYDDDRKLIGVISVSIDSRPFLETRATLSDVKNAAPGSDLDYNRAKSGISNKLGLDSQQPLQVALASKISNLASKVSNKVKSRMRTGENGVDRDGWSGESHHSDQSFSDCVFSDQKEDGNSSGASTPRGDVPPPFGVFCHVEEKSPAKSSRDSGDDGEGKPIHKIITSKAEAWIQKRTLSWPWRGNGQAGSEARNVSVARPLVQNDQENELVNQMNLSSESRMEVQSGNRPVNNEASGSWSSVNVNSTSSTSSCGSGSSGAVNNKVDIDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSEDVILSFRQEVSVLKRLRHPNIILFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTSKLDWRRRVHMALDIARGVNYLHRCSPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDTLNAMQVIGAVGFMNHQLEIPADVDPQWASIMESCWHSDPAQRPTFQELVERLREMQRRHAIQLQAARSASGGSNQKES 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00999 774 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 30 772 - -
Aip04g00999 774 MobiDBLite consensus disorder prediction 432 474 - -
Aip04g00999 774 Pfam PAS domain 136 231 IPR000014 -
Aip04g00999 774 MobiDBLite consensus disorder prediction 295 314 - -
Aip04g00999 774 ProSiteProfiles PAS repeat profile. 119 190 IPR000014 -
Aip04g00999 774 SMART serkin_6 496 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00999 774 Gene3D Phosphorylase Kinase; domain 1 489 573 - -
Aip04g00999 774 MobiDBLite consensus disorder prediction 33 49 - -
Aip04g00999 774 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Aip04g00999 774 TIGRFAM sensory_box: PAS domain S-box protein 119 231 IPR000014 -
Aip04g00999 774 Gene3D Transferase(Phosphotransferase) domain 1 574 774 - -
Aip04g00999 774 Coils Coil 8 35 - -
Aip04g00999 774 ProSiteProfiles Protein kinase domain profile. 496 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00999 774 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 30 772 - -
Aip04g00999 774 MobiDBLite consensus disorder prediction 315 341 - -
Aip04g00999 774 MobiDBLite consensus disorder prediction 29 114 - -
Aip04g00999 774 CDD PAS 136 231 IPR000014 -
Aip04g00999 774 SUPERFAMILY PYP-like sensor domain (PAS domain) 119 231 IPR035965 -
Aip04g00999 774 SMART pas_2 121 188 IPR000014 -
Aip04g00999 774 CDD STKc_MAP3K-like 502 748 - -
Aip04g00999 774 Gene3D PAS domain 132 233 - -
Aip04g00999 774 MobiDBLite consensus disorder prediction 292 352 - -
Aip04g00999 774 MobiDBLite consensus disorder prediction 68 103 - -
Aip04g00999 774 SUPERFAMILY Protein kinase-like (PK-like) 485 748 IPR011009 -
Aip04g00999 774 Pfam Protein tyrosine and serine/threonine kinase 496 748 IPR001245 GO:0004672|GO:0006468
Aip04g00999 774 PRINTS Tyrosine kinase catalytic domain signature 570 583 IPR001245 GO:0004672|GO:0006468
Aip04g00999 774 PRINTS Tyrosine kinase catalytic domain signature 609 627 IPR001245 GO:0004672|GO:0006468
Aip04g00999 774 PRINTS Tyrosine kinase catalytic domain signature 656 666 IPR001245 GO:0004672|GO:0006468
Aip04g00999 774 PRINTS Tyrosine kinase catalytic domain signature 675 697 IPR001245 GO:0004672|GO:0006468
Aip04g00999 774 PRINTS Tyrosine kinase catalytic domain signature 719 741 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00999 Aip-Chr4 14127052 14133522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00999 9 765 MAP Kinase Kinase Kinase AT3G06620 56.739 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Aip04g00999 PK_Tyr_Ser-Thr 3.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00999 - - gmx:100800867 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00999 04 14127052 14133522 Aip04g00999 04 14127052 14133522 ECH
Aip01g02907 01 131007890 131013010 Aip04g00999 04 14127052 14133522 PCT