Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00990 ATGGAAGGGAAGAATACACCACCACTTTCATCACTATCATCACCGCCACAAATCTTTTCACCGCCATCACCACCATTTTCATTGTCTATACCCACCACTACTATCGATGATCTCAACTTTCTCGACGATGATACGTTTCTTGAAAACCCCCTTCCTGATTTAGTAAAAGAGGGAGACTTTGGTCCTTTATATGAGTGGTTAGGTATCACCGATGAAGATGCTCCACCGGTTGAAAGACCAGTAAAGCGTTCTCTTCCTCCAGACGCAATTGTTCCAGAATCTTTTGAAACAGTTGCACAATCAGAAAGCTCATCCTTTTTTTCAATTCCATCCAATCCTGATGTCGCTGTTAGTAACAACAATAATAGCTCTAGAGTTGCTGGTAAACGTCCAGCAGAATCTGTTGCCGGTGACGGTGGAAATGCAAGTCCGAGAAGCGATGAACCTGATGATGAAAAAGTTAATACTATAACTAGGCTGAAACTGAAACCATCTACAATGACATCGATTGCAGCAACCATGAGGCTAAATAGAAGGAGTGAAAATAATATTCCAAAATTGGCTTTCTTGACGGAGAGTGAATCAGACAACCTTGAAGATGGCTATAAATGGCGCAAGTACGGTCGAAAAACCGTGAGAAACAGCCCTTACCCAAGGAACTACTATCGTTGCACAGCAATTGGTTGCAATGTGAAGAAGAGAGTGGAGCGGTGGTTAGATGATCCCACCCATGTATTAACCACCTATGAGGGTCTACACCTTCATGGTTTGCCACCGATCCCCCCTACTCCGTCCAAGTCCTTCCACCTCTACAACAACTGCACCACTGGCCCCAAACCTGACAGATGCAGCTGTAGCTGTCGATGTAAAGGTGCAGTCGCAGTTGCAGGTGCAGGGGAACAAAATCGTGCTAATAACGCTATTACTAGTGTTCATCTTGGAACTGTCAGTGGTGGTAGCGGTGTTAATGACGGTGGCTCGCTGCGCATCGTGGCAGGTGAAAATGAATTTAATTATAATAAACACATGCAGAATGTAGAACAAGCAATTACACCAATAATATTACAGAACTTCATGTTAAGTGCTCCACAGACTTCCTTGAATAATTTTACTCCCATGACTATTATTAATAATGGTCATTACCAATCATCACTGATGAATGTTCATCATGATGGTAACAATCATCGTCAAGATTGTTTTGGTGCTGGATCTTCAAATGGTGGTGCCGAGGATTTGTTTAGGAACAAGAGTACTGGTACTGGGCTGCTTGAAGATATTGTTAATTTCTCATGA 1293 0.4277 MEGKNTPPLSSLSSPPQIFSPPSPPFSLSIPTTTIDDLNFLDDDTFLENPLPDLVKEGDFGPLYEWLGITDEDAPPVERPVKRSLPPDAIVPESFETVAQSESSSFFSIPSNPDVAVSNNNNSSRVAGKRPAESVAGDGGNASPRSDEPDDEKVNTITRLKLKPSTMTSIAATMRLNRRSENNIPKLAFLTESESDNLEDGYKWRKYGRKTVRNSPYPRNYYRCTAIGCNVKKRVERWLDDPTHVLTTYEGLHLHGLPPIPPTPSKSFHLYNNCTTGPKPDRCSCSCRCKGAVAVAGAGEQNRANNAITSVHLGTVSGGSGVNDGGSLRIVAGENEFNYNKHMQNVEQAITPIILQNFMLSAPQTSLNNFTPMTIINNGHYQSSLMNVHHDGNNHRQDCFGAGSSNGGAEDLFRNKSTGTGLLEDIVNFS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00990 430 Gene3D WRKY domain 183 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g00990 430 ProSiteProfiles WRKY domain profile. 193 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g00990 430 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 92 267 - -
Aip04g00990 430 SMART WRKY_cls 198 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g00990 430 MobiDBLite consensus disorder prediction 105 128 - -
Aip04g00990 430 SUPERFAMILY WRKY DNA-binding domain 191 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g00990 430 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 92 267 IPR044810 GO:0003700
Aip04g00990 430 MobiDBLite consensus disorder prediction 1 27 - -
Aip04g00990 430 Pfam WRKY DNA -binding domain 199 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g00990 430 MobiDBLite consensus disorder prediction 105 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00990 Aip-Chr4 13887506 13892912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00990 186 261 WRKY Transcription Factor Family AT5G49520 67.105 1.89e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip04g00990 WRKY 2.3e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00990 - - adu:107483375 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00990 04 13887506 13892912 Aip04g00990 04 13887506 13892912 ECH