Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00961 ATGGATATGAAACGAAGGCTAAACAACAACAACAATGACAATAACGACGATGACATGGACCTCCGAAGAGGTCCATGGACCGTCGACGAAGACCTTACCCTCATCAATTACATTGCCAATCATGGCGAAGGTCGCTGGAATTCTCTTGCCCGCTCTGCCGGACTGAAACGAACCGGGAAGAGCTGCAGATTGAGATGGTTGAATTATTTGCGCCCAGATGTTAGACGTGGTAACATCACTCTTGAAGAACAGCTTCTTATTCTTGAGCTCCATGCTAGTTGGGGAAACAGATGGTCGAAAATTGCTCAATACCTACCTGGAAGAACTGACAACGAGATCAAGAACTATTGGAGAACTCGTGTTCAAAAACATGCGAAACAACTCAAATGTGATGTAAATAGCAAGCAATTCAAAGACACCATGCGCTTCCTTTGGATGCCAAGACTAGTGGAACGCATACAGGCGGCCGCAGCAACGGTTACAACTGCTGCGACTGCTGCGACCGCCACGTCGTCCAATTCTCCGACTTTATCAGCTACTAAATCAGTCGCTATTAACAACAATAATACTACTACAGCATACAACTTCGACAACCTTAACAACTTGGAGGTTCATAGTGGAAACATTATGAATATGAGCAACAACAACTTTGGTTATGCTACTCCAGAGAATAGTAGCACAGGAACATCATCGGATTCGTTTGTCACACAAGATTATTGCAACAATAATAATAATGTTCATGTTGGTAACAACAACAACAACAACAACAGTGACCCTAGTTCGGATTATTACCATCAACAAGGAAATAACAACAACCAAGTTAGCTTCATGGATTGCATCACTAGTCCATCCTCCATGTCATTGTTCCCTCATCAAGAGATGGATTTCCAAGCCATGGAATTACCAAACACCCCTTGGATTAATAATCCCTCTACATTCAGCAATTTCTGGAATGATGAAAACATGTTGCTTCTACAAAATCTAGGATGTGGTGACAACATGTGA 1005 0.4249 MDMKRRLNNNNNDNNDDDMDLRRGPWTVDEDLTLINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHASWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRFLWMPRLVERIQAAAATVTTAATAATATSSNSPTLSATKSVAINNNNTTTAYNFDNLNNLEVHSGNIMNMSNNNFGYATPENSSTGTSSDSFVTQDYCNNNNNVHVGNNNNNNNSDPSSDYYHQQGNNNNQVSFMDCITSPSSMSLFPHQEMDFQAMELPNTPWINNPSTFSNFWNDENMLLLQNLGCGDNM 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00961 334 SMART sant 22 72 IPR001005 -
Aip04g00961 334 SMART sant 75 123 IPR001005 -
Aip04g00961 334 CDD SANT 96 119 IPR001005 -
Aip04g00961 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 74 IPR017930 -
Aip04g00961 334 Gene3D - 20 76 - -
Aip04g00961 334 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Aip04g00961 334 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Aip04g00961 334 MobiDBLite consensus disorder prediction 245 268 - -
Aip04g00961 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Aip04g00961 334 PANTHER MYB TRANSCRIPTION FACTOR 1 329 - -
Aip04g00961 334 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 329 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aip04g00961 334 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Aip04g00961 334 Gene3D - 80 142 - -
Aip04g00961 334 MobiDBLite consensus disorder prediction 1 22 - -
Aip04g00961 334 CDD SANT 25 70 IPR001005 -
Aip04g00961 334 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Aip04g00961 334 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00961 Aip-Chr4 13253524 13256222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00961 19 234 MYB Transcription Factor Family AT1G48000 58.796 1.74e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip04g00961 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00961 K09422 - gmx:100805341 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00961 04 13253524 13256222 Aip04g00961 04 13253524 13256222 ECH