Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00881 ATGGACCAGTACGAGAAGGTTGAGAAGATTGGGGAAGGAACCTACGGCGTCGTTTACAAGGCTCGCGACCGCGTTACCAACGAGACCATCGCTCTCAAGAAGATTCGCCTTGAGCAGGAGGATGAAGGCGTTCCTAGCACTGCAATTCGCGAGATTTCTCTCCTCAAGGAAATGCAGCACAGGAATATTGTTAGGTTGCAGGATGTGGTGCACAGTGAGAAGCGATTGTATTTGGTTTTTGAGTATCTGGACTTAGATCTAAAGAAGCATATGGATTCATCTCCTGAGTTTGTTAAAGATCCACGGCAAGTAAAAATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTATTGTCATTCACATAGAGTTCTTCACCGAGACTTGAAACCACAGAATTTCGTTATTTCTTTCTTCATATTTATTTATTTTCAAATTTGTGTGGTGACACTGTGGTACAGAGCTCCAGAAATATTGCTCGGATCTCGTCATTACTCTACCCCAGTTGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGTAAACCGGCGACCTCTATTCCCTGGAGATTCCGAGATTGATGAATTGTTTAAAATATTCAGAATCATGGGCACCCCAAATGAAGATACATGGCCTGGGGTAACTTCATTGCCTGATTTTAAATCAACCTTTCCCAAGTGGCCACCTAAGGAGCTAGCTAATGTGGTTCCAAATCTTGACCCCGCTGGTCTTGACCTCCTTTCTAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAATGCTGTAGAGCATGAATACTTCAAGGACATTAAGTTTGTACCATGA 834 0.4329 MDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNFVISFFIFIYFQICVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNRRPLFPGDSEIDELFKIFRIMGTPNEDTWPGVTSLPDFKSTFPKWPPKELANVVPNLDPAGLDLLSSMLCLDPSKRITARNAVEHEYFKDIKFVP 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00881 277 PANTHER CELL DIVISION PROTEIN KINASE 3 274 - -
Aip04g00881 277 CDD STKc_CDK1_CdkB_like 4 270 - -
Aip04g00881 277 Gene3D Transferase(Phosphotransferase) domain 1 86 275 - -
Aip04g00881 277 PANTHER - 3 274 - -
Aip04g00881 277 SMART serkin_6 4 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00881 277 Pfam Protein kinase domain 4 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00881 277 ProSiteProfiles Protein kinase domain profile. 4 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00881 277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Aip04g00881 277 SUPERFAMILY Protein kinase-like (PK-like) 1 273 IPR011009 -
Aip04g00881 277 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Aip04g00881 277 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00881 Aip-Chr4 11742631 11746202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00881 1 277 Core Cell Cycle Gene Families AT3G48750 76.190 1.20e-164 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Aip04g00881 Pkinase 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00881 K02206 - gmx:100780359 515.383