Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00873 ATGGGTGCTCCTAAGCAGAAATGGACATCTGAAGAGGAAGCAGCTCTTAAAGCTGGAGTTGTCAAGCATGGGGTTGGTAAATGGCGTACAATACTCAAGGATCCAGAATTTAGTGGTGTTTTGTATCTGCGGTCCAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGTGTGATGGCAAATGGATGGAGTTCTAGGGAAAAGTCTAGGTTGGCTATCAGAAGGGTGCATCAAGCCCCAAAACACGACGAGAACCCTTTCGCTGTCCCTCCTTTTACTCCAAGTGATGAAGATATTGTTGATGTTAAGCCTATTCAAGTTTCTAGAGAGGTGGTGCCATTTTCTGGTCCAAAAAGGTCTATTGTAAGATTGGATAACCTTATAATGGAGGCAATAACTACCTTGAAGGAAACTGGTGGTTCTAATAAGACAACTATTGCAGCTTTCATAGAGGACCAATATTGGGCACCACCTGACTTCAAAAGGTTGTTGTCAGCAAAGTTAAAGTATTTGACAGCATGTGGAAAGCTGATCAAGGTAAAACGCAGATATAGGATTGCACCTACGCCAGCATATTCTGACAGAAGAAGAAGCTCAAGCTTGTTAATGGATGGGAGGCAGAAAGCCTCTTTGAGAGGTGACAAGGAAGAGACCAATGTCCTTACGAAGTCTCAGGTAGATTTAGAATTAGCAAAGATAAGGTCGATGTCTGCACAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCTGCCATAGCAGAAGCTGAAGAGGCAGCAAGAGAGGCAGAGACAGCAGAAGCTGATGCAGAGGCGGCACAAGCTTTTGCAGATGCTGCTATGAAAACACTGAAGGGTCGAAACACCCCAAAGATGATGATCCATGCTTAA 900 0.4456 MGAPKQKWTSEEEAALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLAIRRVHQAPKHDENPFAVPPFTPSDEDIVDVKPIQVSREVVPFSGPKRSIVRLDNLIMEAITTLKETGGSNKTTIAAFIEDQYWAPPDFKRLLSAKLKYLTACGKLIKVKRRYRIAPTPAYSDRRRSSSLLMDGRQKASLRGDKEETNVLTKSQVDLELAKIRSMSAQEAAAVAARAVAEAEAAIAEAEEAAREAETAEADAEAAQAFADAAMKTLKGRNTPKMMIHA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00873 299 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Aip04g00873 299 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip04g00873 299 Gene3D - 118 197 IPR036388 -
Aip04g00873 299 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Aip04g00873 299 MobiDBLite consensus disorder prediction 196 216 - -
Aip04g00873 299 SUPERFAMILY "Winged helix" DNA-binding domain 117 197 IPR036390 -
Aip04g00873 299 SMART sant 4 59 IPR001005 -
Aip04g00873 299 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip04g00873 299 Coils Coil 242 279 - -
Aip04g00873 299 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 296 - -
Aip04g00873 299 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Aip04g00873 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Aip04g00873 299 PANTHER SINGLE MYB HISTONE 4 1 296 IPR044597 GO:0003691
Aip04g00873 299 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip04g00873 299 Gene3D - 2 59 - -
Aip04g00873 299 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00873 Aip-Chr4 11589450 11593659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00873 1 299 Single Myb Histone (SMH) Gene Family AT1G49950 66.118 1.55e-107 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip04g00873 Linker_histone 7.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00873 K09422 - gmx:100780698 381.333