Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00869 ATGAAGAAAGTCATAGCAGCCACAAGCCGAAAGCGTAAACAAGATCGCTCTCGCGCAAACAAAGAACAAGTTCCTGATGATGAACCTGTATCAGTCAAAGCCTCAGGTAAGAAAGGTTCTTCTACACAAGATAAGTCCTTCAGTTTCTCCCTTTCAGATCCAGACGTCCTTGATTGCCCCATTTGCTTTAATCCTTTCACCACTCCAGTCTATCAGTGTGAAAATGGTCATGTTGCTTGCTCTGTTTGCTGCTCGCGCATTCTTGAGAAAAAGTGTGCCTCCTGCTTCTTGCCAATAGGTTCCATTCGTAACAGAGCCTTGGAGAAAGTTCTGGAATCTGTTAAAGTGCCATGCGCTAATGCCGAATACGGTTGCACGGAAACACTCCGTTACAGTGACAAGTCTGGCCACGAATCCCAATGCAACTTTGTCCCATGCTCTTGTCCACACTCAGATTGTGACTTCGTTTCATCATTCTCGGATCTACCCGCCCACTATAGAACTGAGCATGGTTCGTCTGCCAGCGCCGGAGTGAGGTTTTTGTACGATAAGCCTTTCAAGGTCACACTGAATTCTGATGATGACGATGATGACGTCACTATACTTCAAGAAGTGAATGGTGGAAAGTTGTTCATAGTAAAGAATTTTGTGGCGGGTCTTGGAAATGCTGTCAGTGTTTTCTGCATTCAGCCAGAGTTATTGCCTAACTATCGGTGCCAAATTTCGGCCAAGTCAAATGGATGCAGTCTGGTGATGAATTCTTTTACAAAAAACACTCAAAACTCTGCTATGGCGACTATTCTTTCATCAAGGTTTCTGCTCATTCCAACTGATTATTTTGGTGCCGGTCAACCTCGCGCTTTTGAAATTTGCATATTTAGGTCATATGAGTAG 894 0.4418 MKKVIAATSRKRKQDRSRANKEQVPDDEPVSVKASGKKGSSTQDKSFSFSLSDPDVLDCPICFNPFTTPVYQCENGHVACSVCCSRILEKKCASCFLPIGSIRNRALEKVLESVKVPCANAEYGCTETLRYSDKSGHESQCNFVPCSCPHSDCDFVSSFSDLPAHYRTEHGSSASAGVRFLYDKPFKVTLNSDDDDDDVTILQEVNGGKLFIVKNFVAGLGNAVSVFCIQPELLPNYRCQISAKSNGCSLVMNSFTKNTQNSAMATILSSRFLLIPTDYFGAGQPRAFEICIFRSYE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00869 297 MobiDBLite consensus disorder prediction 1 46 - -
Aip04g00869 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 9 293 IPR044286 -
Aip04g00869 297 SUPERFAMILY RING/U-box 54 116 - -
Aip04g00869 297 Pfam Seven in absentia protein family 102 218 IPR018121 GO:0005737|GO:0006511|GO:0007275
Aip04g00869 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 165 IPR013083 -
Aip04g00869 297 SUPERFAMILY TRAF domain-like 113 281 - -
Aip04g00869 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 9 293 - -
Aip04g00869 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 112 IPR013083 -
Aip04g00869 297 MobiDBLite consensus disorder prediction 8 33 - -
Aip04g00869 297 ProSiteProfiles Zinc finger SIAH-type profile. 113 171 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00869 Aip-Chr4 11514087 11515074 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00869 37 180 C3H Transcription Factor Family AT2G41980 36.986 1.99e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00869 K04506 - gmx:100778869 228.794