Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00866 ATGAAGAAAGTCATAGCAGCCACAAGCCGAAAGCGTAAGCAAGATCGCTCTCGCGCAAAAGAAGAACAAGTTCCTGATGATGAACCTGTAACAGTCAAAGCCTCAGGTAAGAAAGGTTCTTCTGCACAAGATAAGTCCTTCAGTTTCTTCCTTTCAGACCCAGACGTCCTTGATTGCCCCATTTGCTTTAATCCTCTCACCACTCCAGTCTATCAGTGTGAAAATGGTCATGTTGCTTGCTCTGCTTGCTGCTCGCGCATTCTTGAGAAAAAGTGTGCCTCCTGCTTCTTGTCAATAGGTTCCATTCGTAGCAGAGCCTTGGAGAAAGTTCTGGAATCTATTAAAGTTCTATGCGCTAATGCCAAATACGGTTGCACGGAAACACTGCGTTACAGTGACAAGTCTGGCCATGAATCCCAATGCAACTTTGTCCCATGCTCTTGTCCACACTCACATTGTGACTTCGTCTCATCATTCTCGGATCTACCCGCCCACTATAGAACTGAGCATGGTTCCTCTGCCAGCGCCGGAGTGAGGTTTTCGTACGATAAGCCCTTCAAGGTCACACTGGATTCTGATGATGACGTCACTATACTTCAAGAAGTGAATGGTGGAAAGTTGTTCATAGTCCAGAATTTTGTTGCCGGTCTTGGAAATGCTGTCAGTGTTCTCTGCATTCAGCCAGAGTTATTGCCTAACTATCGGTGCCAAATTTCGGCCAAGTCAAATGGATGCAGTCTGGTGATGAATTCTTTTACCAAAAACACTCAAAACTCTGCTATGGCCAGATTGGCCACTATTCTTTCATCAAGGTTTCTGGTCATTCCAACTGATTATTTTGGTGCCGGTAAACCTCGCAATTTTGAAATTTGCATATTTAGGTCATATGAGTAG 894 0.4463 MKKVIAATSRKRKQDRSRAKEEQVPDDEPVTVKASGKKGSSAQDKSFSFFLSDPDVLDCPICFNPLTTPVYQCENGHVACSACCSRILEKKCASCFLSIGSIRSRALEKVLESIKVLCANAKYGCTETLRYSDKSGHESQCNFVPCSCPHSHCDFVSSFSDLPAHYRTEHGSSASAGVRFSYDKPFKVTLDSDDDVTILQEVNGGKLFIVQNFVAGLGNAVSVLCIQPELLPNYRCQISAKSNGCSLVMNSFTKNTQNSAMARLATILSSRFLVIPTDYFGAGKPRNFEICIFRSYE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00866 297 ProSiteProfiles Zinc finger SIAH-type profile. 113 171 IPR013010 GO:0008270
Aip04g00866 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 8 294 - -
Aip04g00866 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 8 294 IPR044286 -
Aip04g00866 297 SUPERFAMILY RING/U-box 54 98 - -
Aip04g00866 297 MobiDBLite consensus disorder prediction 1 43 - -
Aip04g00866 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 165 IPR013083 -
Aip04g00866 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 115 IPR013083 -
Aip04g00866 297 MobiDBLite consensus disorder prediction 8 33 - -
Aip04g00866 297 SUPERFAMILY TRAF domain-like 113 281 - -
Aip04g00866 297 Pfam Seven in absentia protein family 102 209 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00866 Aip-Chr4 11467411 11468304 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00866 55 182 C3H Transcription Factor Family AT2G41980 36.154 3.50e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00866 K04506 - gmx:100778869 233.417