Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00842 ATGGTTCAGAAACTATCAGAATTTCTTATCATATTCTTCATAATATGTCCATTATTTCTTGCTTCTGCACAAAATGATTATCCAATTACATCACAATCTGATTGTGTATCAACCTGTGGATCTATCGATATTCCATACCCCTTTGGAATGAAGGATCCAAAATGCTATGCCGATAAGTCGTTCGAAATCGAATGCAGAAACCAGAAACCATACCTTAAGCTCATAAACCTTGAGGTCACAGTCATATATGCTTCGAGTAGCATGGTAGAGATCATGAACCCAGTTTTTCGATGGAAGTGCAAAGATGACAAAGATTCAAAGCCATTCGTGAACCTCACAGGAACACCTTTTTCTTATTCCAACGATCAAAACAAGTTCACGGCCATAGGTTGCAACAAGATCGCATTTTTGGTGTCTAACGGCTTAGAAGTCAGCGGTTGTGTCACCCTTTGCGACCAACACGACAATGAAGAGGTTAACAGCAACGTTGCTTATGGACAAGGAACCGATGGGTGCTTAGGCAGGTTCTGCTGTGAGACATCACTGCCTCTGTACCTTTCAGAATTCAACGTGACACTTGAAAGCATGAACAATAGAAGTTCAAGCGATGAATGCGTTCATGCGTTGATTGGGACAGATTATTGGTACGAAATTTATGATGGTACTAGTACTGAGTATAGAAGCCTTGGTGACTTAAGGGGTTTGAACTATGTTCGTGCCATGCTTGATTGGGTGATTCTCAACAACACCGTGAAACTACCTTCGGATTCAAACTGCACCCATGTTGTTGGTTATTCTTCTGATTCTTCTGCTCGCATATGTGAGTGCTACTCAGACTCTTTTGGCAATCCATATGTTACTGGAGGTTGCATTGGAGTATCCGCAAGCCTGGGATCTATCATTCTTCTTCTGGGTCTGTGGTTTATGTACATTGTTGTAAGGAGAAGAATTATAAAGAAACGCAAAGAGAAATTCTTCAAACAAAATGGTGGATTGTTGTTGCAACAAAGATTATCCACCGGAGAAGTGAGTGTTGAACAAGCTAAAGTGTTCAGCTTAAGGGAGTTAGAGAAGGCCACTGACAACTTCAATCTCAACAGAGTTCTTGGAAAGGGAGGTCAAGGTACTGTTTACAAGGGCATGTTAGTAAATGGCGAAATTGTTGCGGTTAAGAGGTTCAAGGTTCAAGGAAAGGTTGAAGAATTCATCAACGAATTCGTGATTCTTTCACAAATTAACCATAGAAATGTGGTGAAGCTGTTAGGGTGTTGTTTGGAGACAGAAATTCCTCTGCTCGTTTATGAATTCATTCCTAATGGTAATCTTTTTGAATACTTGCATGATCAAAACGAAGAGTTACCAATGACATGGGACATGCGTTTAAGGATTTCAATTGAAGTTGCTGGAGCTTTGTTTTACTTACACTCAATTGCATATCAGCCAATTTATCATAGAGATGTGAAATCAACCAATATACTTTTAGATGGAAAGTACAGAGCAAAATTGGCAGATTTTGGTGCATCTAGAATAATTTCTACAGAAGCCACTCATCTCACTACGGTAGTTCAAGGGACTTTTGGATATTTAGATCCGGAATATTTTCATACTAGTCAATTTACGGAAAAGAGTGATGTTTATAGTTTTGGAGTAGTTCTGGTTGAACTTTTGACGGGCGAAAAGCCGATATCATCGATAAGAGAGGAAGATGCCAAGAGTTTGGCATCTTATTTTGTTGGTTCTATGGAACAAGATTGTTTGTTTGAGATTGTTGACAAGAGAGTGATGAAAGAAGGGGAGCAAGAACAGATCATTGGGGTTGCTAATCTTGCGTATAGGTGCTTGGAGTTGAATGGGAGAAAAAGGCCTACTATGAAAGAAGTCACATTGGAGTTAGAAAGGATTCGGAATTTGGATAGGAAGGTTGATGATGTTGTTGTTGTTGTTGATTCACAAGAGCAATACCGCCATGAAGAGATTGAGTTTGTTGGAACTGAAATGCCATGGACAGGGGATTCTGAATTAGATACATTGCCAAGCATAGGAAACAATACAACCTCCTCGGAAATTAGGCCTATCCATGCAAAATATAATTGA 2094 0.3959 MVQKLSEFLIIFFIICPLFLASAQNDYPITSQSDCVSTCGSIDIPYPFGMKDPKCYADKSFEIECRNQKPYLKLINLEVTVIYASSSMVEIMNPVFRWKCKDDKDSKPFVNLTGTPFSYSNDQNKFTAIGCNKIAFLVSNGLEVSGCVTLCDQHDNEEVNSNVAYGQGTDGCLGRFCCETSLPLYLSEFNVTLESMNNRSSSDECVHALIGTDYWYEIYDGTSTEYRSLGDLRGLNYVRAMLDWVILNNTVKLPSDSNCTHVVGYSSDSSARICECYSDSFGNPYVTGGCIGVSASLGSIILLLGLWFMYIVVRRRIIKKRKEKFFKQNGGLLLQQRLSTGEVSVEQAKVFSLRELEKATDNFNLNRVLGKGGQGTVYKGMLVNGEIVAVKRFKVQGKVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEELPMTWDMRLRISIEVAGALFYLHSIAYQPIYHRDVKSTNILLDGKYRAKLADFGASRIISTEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLVELLTGEKPISSIREEDAKSLASYFVGSMEQDCLFEIVDKRVMKEGEQEQIIGVANLAYRCLELNGRKRPTMKEVTLELERIRNLDRKVDDVVVVVDSQEQYRHEEIEFVGTEMPWTGDSELDTLPSIGNNTTSSEIRPIHAKYN 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00842 697 CDD STKc_IRAK 369 634 - -
Aip04g00842 697 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 649 IPR045274 GO:0007166
Aip04g00842 697 Pfam Wall-associated receptor kinase galacturonan-binding 35 91 IPR025287 GO:0030247
Aip04g00842 697 ProSiteProfiles Protein kinase domain profile. 363 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00842 697 MobiDBLite consensus disorder prediction 676 697 - -
Aip04g00842 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Aip04g00842 697 SUPERFAMILY Protein kinase-like (PK-like) 348 637 IPR011009 -
Aip04g00842 697 Pfam Protein tyrosine and serine/threonine kinase 364 629 IPR001245 GO:0004672|GO:0006468
Aip04g00842 697 Gene3D Phosphorylase Kinase; domain 1 335 436 - -
Aip04g00842 697 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 13 649 - -
Aip04g00842 697 SMART serkin_6 363 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00842 697 Gene3D Transferase(Phosphotransferase) domain 1 437 655 - -
Aip04g00842 697 MobiDBLite consensus disorder prediction 676 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00842 Aip-Chr4 11135645 11140650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00842 1 642 Receptor kinase-like Gene Family AT1G16120 41.241 6.67e-176 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Aip04g00842 PK_Tyr_Ser-Thr 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00842 - - mtr:MTR_2g031530 804.283