Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00838 ATGATTCTTCAATCTGCATTTCACTACTATTCTCATATCATCATTTTGATGATAATATCCATATATCCATTGTTATTGGCATGTGCAAAAGACCCAACCATAGCAAAACCTGGTTGTGTTTCCACATGTGGGAACGTTGACATCGCTTACCCTTTTGGGATGAACGACTCCAATTGCTATGCTCACAAATTTTTCGAGATAGAGTGCAAAAATCACAAGCCTTACCTTGCATCATTCAATCTTGAGGTCACACAAATTTATGTAAACATTAGTACGGTGGAGATCAAGAACCCAATCTACTATAGCTGCCAAAGCAAAAACGCTTTCATAAACCTAAAAGGAAGCCCTTACGTGTATTCCCAAGAATATGACAAATTCATGGCCATTGGTTGCAACAAACTAGGGTTCTTGCGTTCCAACGGTTCAACGGTTGGCGGTTGCGTGTCCATCTGCGACGACGACGAAGCGGTTGGAAATGTTGAATTCGAGAACGACGGTTGCCATGGGAGATACTGCTGTGAGACTTCACTGCCTATGCATGTTTGGGAGTACAACGCAACAATAAGGGATATTGGAGATGGAAGTGAGAGCAACATGTGTAGCTATGCCATGATTGTGAGTGATGCTTGGCTTCAGAGTTATGGTTTGGGGATTCAGAAACTTAGTAACGTAGTAAACATGGTTGATGTTCCTGCTGTTCTTGAGTGGGAGGTTGGGTATGATATGGGGATCAATAATTCAACACTCTCTTCTTCTTCTCATGCTCGTTGTGACGCTTCGAGTCTTGCGTCTCCAACCAACACTACCTCTGGTTTTAGGTGTCGCTGCTTGGATGGTTACGATGGCAATCCCTACATTCAAGGGGGTTGCAACGCTGTGGCATCCGGTAAAGAAAATGGATCCAAATGGGCTATAGTAGGAGTTTCATCAAGTCTTGGGTCAGTCATTTTACTCCTTGGTGGATGGTTGTTGTACAAACTTATAAGGAAGAGAATAATAAAGAAACGCAAGGAAAAGTTCTTCAAGAAAAATGGCGGTTTGTTGTTAAAACAAAAGTTGTCTTCAGGCGAAGAAAATGTTGACAAAGTTGTTCTCTTCACCTTAAAAGAATTAGAAAATGCCACTGACAACTTCAATCTAAACAGAGTTCTTGGAAAAGGAGGTCAAGGTACCGTTTACAAGGGAATGCTAGTAGATGGCAAAATCGTTGCAGTTAAAAAGTTCAAAGTCCAAGGAAACACTGCAGAATTCATCAATGAATTCGTTGTTCTTAATCAAATTAACCATAGAAATGTGGTTAAGTTATTAGGGTGTTGTTTGGAGGATGAAGTTCCTTTGCTCGTTTATGAGTTTATTCCCAATGGTAACCTTTATGAACATCTTCATGAACAAAATGAGGATTTACCAATGACATGGGACATGAGATTGAGAATTGCGAGTGAGATTGCAGGAGCACTTTTTTACTTACACTCCATTGCTTCTCAACCCATTTATCACAGAGATATCAAATCAACAAACATACTATTGGATGAAAAGTACAGGGCAAAAGTGGCAGATTTTGGAACCTCTAGAATAGTTTCTGCTGAAGTTACTCATCTCACTACGGTAGTTCAAGGAACTTTTGGTTATTTAGATCCCGAATACTTTCAAACTAGTCAGTTTACTGATAAGAGCGATGTTTATAGTTTTGGAGTAGTGCTTGTCGAACTTTTAACCGGACAGAAGGCAATATCGTCGATAAGATCGGACGAAGTGAGGGGTCTAGCTTCGTTTTTTGTTGTGTGTATGGAAGAGAATCGGGTATTTGACATTGTTGACAAAAGAGTGTTGAAGGAGGGAGAGAAAGAACATATAATTGCAGTGGCTAATCTTGCATATAGGTGTTTAGAGTTGAACGGGAGAAAAAGGCCTACTATGAAAGAAGTTACCTTGGAATTAGAAGAGATTAGAAGATTGGATTATTGGAAGGGTGGTTCGGCACAAGAAAAGTTTGAAGAAATTGAGCTTGATAGAAATGAAGACAATCAACTATGGGATGGATATTCTAATGTGTCAGAAACATTGCACACTACTACAAGTAGCAGCAGGGAACTCTCCGAGATTATGCCTATTCTTACAATCAAATAA 2127 0.3982 MILQSAFHYYSHIIILMIISIYPLLLACAKDPTIAKPGCVSTCGNVDIAYPFGMNDSNCYAHKFFEIECKNHKPYLASFNLEVTQIYVNISTVEIKNPIYYSCQSKNAFINLKGSPYVYSQEYDKFMAIGCNKLGFLRSNGSTVGGCVSICDDDEAVGNVEFENDGCHGRYCCETSLPMHVWEYNATIRDIGDGSESNMCSYAMIVSDAWLQSYGLGIQKLSNVVNMVDVPAVLEWEVGYDMGINNSTLSSSSHARCDASSLASPTNTTSGFRCRCLDGYDGNPYIQGGCNAVASGKENGSKWAIVGVSSSLGSVILLLGGWLLYKLIRKRIIKKRKEKFFKKNGGLLLKQKLSSGEENVDKVVLFTLKELENATDNFNLNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVQGNTAEFINEFVVLNQINHRNVVKLLGCCLEDEVPLLVYEFIPNGNLYEHLHEQNEDLPMTWDMRLRIASEIAGALFYLHSIASQPIYHRDIKSTNILLDEKYRAKVADFGTSRIVSAEVTHLTTVVQGTFGYLDPEYFQTSQFTDKSDVYSFGVVLVELLTGQKAISSIRSDEVRGLASFFVVCMEENRVFDIVDKRVLKEGEKEHIIAVANLAYRCLELNGRKRPTMKEVTLELEEIRRLDYWKGGSAQEKFEEIELDRNEDNQLWDGYSNVSETLHTTTSSSRELSEIMPILTIK 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00838 708 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 702 IPR045274 GO:0007166
Aip04g00838 708 SMART serkin_6 378 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00838 708 ProSiteProfiles Protein kinase domain profile. 378 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00838 708 Gene3D Transferase(Phosphotransferase) domain 1 452 670 - -
Aip04g00838 708 Gene3D Phosphorylase Kinase; domain 1 350 451 - -
Aip04g00838 708 SUPERFAMILY Protein kinase-like (PK-like) 359 646 IPR011009 -
Aip04g00838 708 CDD STKc_IRAK 384 649 - -
Aip04g00838 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Aip04g00838 708 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 22 702 - -
Aip04g00838 708 Pfam Wall-associated receptor kinase galacturonan-binding 39 95 IPR025287 GO:0030247
Aip04g00838 708 Pfam Protein kinase domain 379 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00838 Aip-Chr4 11058089 11062144 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00838 31 703 Receptor kinase-like Gene Family AT1G79680 42.098 3.26e-180 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Aip04g00838 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00838 - - gmx:100798794 807.749